Aliases for LOC400627 Gene

Data sources for LOC400627 Gene:

RNA type for LOC400627 Gene

lncRNA

Aliases for LOC400627 Gene

External Ids for LOC400627 Gene

Summaries for LOC400627 Gene

GeneCards Summary for LOC400627 Gene

LOC400627 (Uncharacterized LOC400627) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400627 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400627 Gene

Genomics for LOC400627 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC400627 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400627 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC400627 Gene

Latest Assembly
chr17:80,966,238-80,971,214
(GRCh38/hg38)
Size:
4,977 bases
Orientation:
Minus strand

Previous Assembly
chr17:78,940,039-78,945,013
(GRCh37/hg19 by Entrez Gene)
Size:
4,975 bases
Orientation:
Minus strand

chr17:78,940,039-78,945,013
(GRCh37/hg19 by Ensembl)
Size:
4,975 bases
Orientation:
Minus strand

Genomic View for LOC400627 Gene

Genes around LOC400627 on UCSC Golden Path with GeneCards custom track
LOC400627 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC400627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400627 Gene

Proteins for LOC400627 Gene

Post-translational modifications for LOC400627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400627 Gene

Domains & Families for LOC400627 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400627 Gene

Function for LOC400627 Gene

Phenotypes From GWAS Catalog for LOC400627 Gene

genes like me logo Genes that share phenotypes with LOC400627: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400627 Gene

Localization for LOC400627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400627 Gene

Pathways & Interactions for LOC400627 Gene

PathCards logo

SuperPathways for LOC400627 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC400627 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC400627 Gene

Drugs & Compounds for LOC400627 Gene

No Compound Related Data Available

Transcripts for LOC400627 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC400627 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000502B9C_9606 lncRNA 3133 4

RefSeq: NR_148968,

Ensembl: ENST00000576234 (view in UCSC) ,

LNCipedia: lnc-AATK-6:1,

NONCODE: NONHSAT056414.2,

URS000054D038_9606 lncRNA 2091 3

Ensembl: ENST00000573602 (view in UCSC) ,

LNCipedia: lnc-AATK-6:2,

NONCODE: NONHSAT056415.2,

URS00009BF200_9606 lncRNA 3133 1

NONCODE: NONHSAT176648.1,

LOC400627 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC400627 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400627 Gene

No ASD Table

Relevant External Links for LOC400627 Gene

GeneLoc Exon Structure for
LOC400627

Expression for LOC400627 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC400627 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC400627

genes like me logo Genes that share expression patterns with LOC400627: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400627 Gene

Orthologs for LOC400627 Gene

Evolution for LOC400627 Gene

ENSEMBL:
Gene Tree for LOC400627 (if available)
TreeFam:
Gene Tree for LOC400627 (if available)

No data available for Orthologs for LOC400627 Gene

Paralogs for LOC400627 Gene

No data available for Paralogs for LOC400627 Gene

Variants for LOC400627 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC400627 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Variation tolerance for LOC400627 Gene

Gene Damage Index Score: 8.79; 86.79% of all genes are more intolerant (likely to be disease-causing)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC400627 Gene

Disorders for LOC400627 Gene

Additional Disease Information for LOC400627

Open Targets Platform
Open Targets Platform

No disorders were found for LOC400627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC400627 Gene

Publications for LOC400627 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC400627 Gene

Products for LOC400627 Gene

Sources for LOC400627 Gene