Aliases for LOC400627 Gene

Subcategory (RNA class) for LOC400627 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC400627 Gene

  • Uncharacterized LOC400627 3
  • NONHSAG022966 94
  • Lnc-AATK-6 170

External Ids for LOC400627 Gene

Summaries for LOC400627 Gene

GeneCards Summary for LOC400627 Gene

LOC400627 (Uncharacterized LOC400627) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400627 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400627 Gene

Genomics for LOC400627 Gene

GeneHancer (GH) Regulatory Elements for LOC400627 Gene

Promoters and enhancers for LOC400627 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J080968 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +1.9 1854 4.2 CTCF RAD21 ZIC2 NFKBIZ POLR2A TGIF2 GABPA RCOR1 ZNF623 ZNF335 ENSG00000261924 LOC400627 CHMP6 CEP131 HGS ENSG00000262662 lnc-TMEM105-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400627 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC400627 Gene

Genomic Locations for LOC400627 Gene
chr17:80,968,621-80,971,354
(GRCh38/hg38)
Size:
2,734 bases
Orientation:
Minus strand

Genomic View for LOC400627 Gene

Genes around LOC400627 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400627 Gene

Proteins for LOC400627 Gene

Post-translational modifications for LOC400627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400627 Gene

Domains & Families for LOC400627 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400627 Gene

Function for LOC400627 Gene

genes like me logo Genes that share phenotypes with LOC400627: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400627 Gene

Localization for LOC400627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400627 Gene

Pathways & Interactions for LOC400627 Gene

PathCards logo

SuperPathways for LOC400627 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC400627 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC400627 Gene

Drugs & Compounds for LOC400627 Gene

No Compound Related Data Available

Transcripts for LOC400627 Gene

mRNA/cDNA for LOC400627 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400627 Gene

No ASD Table

Relevant External Links for LOC400627 Gene

GeneLoc Exon Structure for
LOC400627

Expression for LOC400627 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC400627 Gene

genes like me logo Genes that share expression patterns with LOC400627: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400627 Gene

Orthologs for LOC400627 Gene

No data available for Orthologs and Evolution for LOC400627 Gene

Paralogs for LOC400627 Gene

No data available for Paralogs for LOC400627 Gene

Variants for LOC400627 Gene

Sequence variations from dbSNP and Humsavar for LOC400627 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000850410 -- 80,972,687(-) G/C upstream_transcript_variant
rs1000857614 -- 80,968,811(-) C/A/T non_coding_transcript_variant
rs1000927900 -- 80,968,956(-) A/T intron_variant
rs1001056915 -- 80,968,456(-) G/T non_coding_transcript_variant
rs1001190828 -- 80,966,215(-) A/G downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC400627 Gene

Disorders for LOC400627 Gene

No disorders were found for LOC400627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400627 Gene

Publications for LOC400627 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC400627 Gene

Products for LOC400627 Gene

Sources for LOC400627 Gene