Aliases for LOC400622 Gene

Data sources for LOC400622 Gene:

Subcategory (RNA class) for LOC400622 Gene

lncRNA

Aliases for LOC400622 Gene

External Ids for LOC400622 Gene

Previous GeneCards Identifiers for LOC400622 Gene

  • GC17P076121
  • GC17P073035
  • GC17U900682
  • GC17P075526

Summaries for LOC400622 Gene

GeneCards Summary for LOC400622 Gene

LOC400622 (Uncharacterized LOC400622) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400622 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400622 Gene

Genomics for LOC400622 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC400622 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400622 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC400622 Gene

Latest Assembly
chr17:77,516,887-77,536,601
(GRCh38/hg38)
Size:
19,715 bases
Orientation:
Plus strand

Previous Assembly
chr17:75,523,083-75,532,680
(GRCh37/hg19 by Entrez Gene)
Size:
9,598 bases
Orientation:
Plus strand

chr17:75,523,080-75,532,674
(GRCh37/hg19 by Ensembl)
Size:
9,595 bases
Orientation:
Plus strand

Genomic View for LOC400622 Gene

Genes around LOC400622 on UCSC Golden Path with GeneCards custom track
LOC400622 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC400622 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400622 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400622 Gene

Proteins for LOC400622 Gene

Post-translational modifications for LOC400622 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400622 Gene

Domains & Families for LOC400622 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400622 Gene

Function for LOC400622 Gene

genes like me logo Genes that share phenotypes with LOC400622: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400622 Gene

Localization for LOC400622 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400622 Gene

Pathways & Interactions for LOC400622 Gene

PathCards logo

SuperPathways for LOC400622 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC400622 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC400622 Gene

Drugs & Compounds for LOC400622 Gene

No Compound Related Data Available

Transcripts for LOC400622 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC400622 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000060C655_9606 lncRNA 843 4

Ensembl: ENST00000591481 (view in UCSC) ,

LncBook: HSALNT0245621,

LNCipedia: lnc-SEPT9-2:4,

NONCODE: NONHSAT056158.2,

URS00003C9859_9606 lncRNA 559 4

Ensembl: ENST00000590438 (view in UCSC) ,

LncBook: HSALNT0245623,

LNCipedia: lnc-SEPT9-2:5,

NONCODE: NONHSAT056159.2,

URS00001D5C6D_9606 lncRNA 4444 3

Ensembl: ENST00000592572 (view in UCSC) ,

LNCipedia: lnc-SEPT9-2:3,

NONCODE: NONHSAT056156.2,

URS0000EF6209_9606 lncRNA 2464 1

Ensembl: ENST00000664436 (view in UCSC) ,

URS0000EF31B0_9606 lncRNA 1307 1

Ensembl: ENST00000655368 (view in UCSC) ,

LOC400622 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC400622 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400622 Gene

No ASD Table

Relevant External Links for LOC400622 Gene

GeneLoc Exon Structure for
LOC400622

Expression for LOC400622 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC400622 Gene

mRNA differential expression in normal tissues according to GTEx for LOC400622 Gene

This gene is overexpressed in Brain - Cortex (x7.3), Brain - Frontal Cortex (BA9) (x7.0), Brain - Anterior cingulate cortex (BA24) (x6.4), Brain - Nucleus accumbens (basal ganglia) (x4.9), Brain - Hippocampus (x4.8), and Brain - Caudate (basal ganglia) (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC400622

SOURCE GeneReport for Unigene cluster for LOC400622 Gene:

Hs.514516
genes like me logo Genes that share expression patterns with LOC400622: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400622 Gene

Orthologs for LOC400622 Gene

Evolution for LOC400622 Gene

ENSEMBL:
Gene Tree for LOC400622 (if available)
TreeFam:
Gene Tree for LOC400622 (if available)

No data available for Orthologs for LOC400622 Gene

Paralogs for LOC400622 Gene

No data available for Paralogs for LOC400622 Gene

Variants for LOC400622 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC400622 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC400622 Gene

Disorders for LOC400622 Gene

Additional Disease Information for LOC400622

Open Targets Platform
Open Targets Platform

No disorders were found for LOC400622 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC400622 Gene

Publications for LOC400622 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LOC400622 Gene

Products for LOC400622 Gene

Sources for LOC400622 Gene