LOC400622 Gene (RNA Gene)

Uncharacterized LOC400622

GC17P077526
GIFtS:
7
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Aliases for LOC400622 Gene

Subcategory (RNA class) for LOC400622 Gene

lncRNA

Aliases for LOC400622 Gene

  • Uncharacterized LOC400622 3

External Ids for LOC400622 Gene

Previous GeneCards Identifiers for LOC400622 Gene

  • GC17P076121
  • GC17P073035
  • GC17U900682
  • GC17P075526

Summaries for LOC400622 Gene

GeneCards Summary for LOC400622 Gene

LOC400622 (Uncharacterized LOC400622) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400622 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400622 Gene

Genomics for LOC400622 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC400622 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J077529 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 600.7 +1.8 1799 1.2 HNRNPL CTCF PRDM10 ZNF692 ZIC2 PKNOX1 PATZ1 ZNF501 EZH2 ZNF600 LOC100507351 LOC400622 SRSF2 METTL23 MFSD11 lnc-TMC6-2 ENSG00000267665 SEPTIN9 TNRC6C
GH17J077526 Enhancer 0.5 Ensembl 600.7 -0.3 -300 0.2 KAT8 YY1 ZNF211 ZNF610 PRDM10 ZNF280D TEAD4 ZBTB8A ZNF680 LOC100507351 LOC400622 ENSG00000267665 SEPTIN9 TNRC6C
GH17J077528 Enhancer 0.2 CraniofacialAtlas 600.7 +1.0 1018 0.2 LOC100507351 LOC400622 lnc-TMC6-2 ENSG00000267665 SEPTIN9 TNRC6C
GH17J077535 Enhancer 0.7 Ensembl 0.4 +8.9 8872 1.1 CREB1 ATF7 PRDM10 ZNF629 ZNF692 ZIC2 ZBTB20 ZBTB48 ZBTB17 ATF2 lnc-TMC6-2 SEPTIN9 SRSF2 LINC01973 TNRC6C RNU1-80P ENSG00000267546 LOC400622 LOC100507351 ENSG00000267665
GH17J077517 Enhancer 0.5 Ensembl 0.4 -9.9 -9900 0.2 ZNF7 FOSL1 JUND ATF3 NFE2 FOS ZNF350 ENSG00000267665 SEPTIN9 SRSF2 LOC400622 TNRC6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400622 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC400622 Gene

Genomic Locations for LOC400622 Gene
chr17:77,527,001-77,536,598
(GRCh38/hg38)
Size:
9,598 bases
Orientation:
Plus strand
chr17:75,523,080-75,532,674
(GRCh37/hg19)
Size:
9,595 bases
Orientation:
Plus strand

Genomic View for LOC400622 Gene

Genes around LOC400622 on UCSC Golden Path with GeneCards custom track
LOC400622 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC400622 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400622 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC400622 Gene

Proteins for LOC400622 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC400622 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400622 Gene

Domains & Families for LOC400622 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400622 Gene

Function for LOC400622 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
genes like me logo Genes that share phenotypes with LOC400622: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400622 Gene

Localization for LOC400622 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400622 Gene

Pathways & Interactions for LOC400622 Gene

PathCards logo

SuperPathways for LOC400622 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC400622 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC400622 Gene

Drugs & Compounds for LOC400622 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC400622 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC400622 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC4607_9606 lncRNA 737 1

RefSeq: NR_148967,

LOC400622 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC400622 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400622 Gene

No ASD Table

Relevant External Links for LOC400622 Gene

GeneLoc Exon Structure for
LOC400622

Expression for LOC400622 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC400622 Gene

mRNA expression in normal human tissues for LOC400622 Gene
mRNA expression by GTEx for LOC400622 Gene

mRNA differential expression in normal tissues according to GTEx for LOC400622 Gene

This gene is overexpressed in Brain - Cortex (x7.3), Brain - Frontal Cortex (BA9) (x7.0), Brain - Anterior cingulate cortex (BA24) (x6.4), Brain - Nucleus accumbens (basal ganglia) (x4.9), Brain - Hippocampus (x4.8), and Brain - Caudate (basal ganglia) (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC400622

SOURCE GeneReport for Unigene cluster for LOC400622 Gene:

Hs.514516
genes like me logo Genes that share expression patterns with LOC400622: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400622 Gene

Orthologs for LOC400622 Gene

No data available for Orthologs and Evolution for LOC400622 Gene

Paralogs for LOC400622 Gene

No data available for Paralogs for LOC400622 Gene

Variants for LOC400622 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC400622 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC400622 Gene

Disorders for LOC400622 Gene

No disorders were found for LOC400622 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400622 Gene

Publications for LOC400622 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LOC400622 Gene

Products for LOC400622 Gene

Sources for LOC400622 Gene