Aliases for LOC399900 Gene

Subcategory (RNA class) for LOC399900 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC399900 Gene

  • Uncharacterized LOC399900 3

External Ids for LOC399900 Gene

Previous GeneCards Identifiers for LOC399900 Gene

  • GC11P061511
  • GC11P061491
  • GC11U901216
  • GC11P061737
  • GC11P058063

Summaries for LOC399900 Gene

GeneCards Summary for LOC399900 Gene

LOC399900 (Uncharacterized LOC399900) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC399900 include Hemochromatosis, Type 5.

Additional gene information for LOC399900 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC399900 Gene

Genomics for LOC399900 Gene

GeneHancer (GH) Regulatory Elements for LOC399900 Gene

Promoters and enhancers for LOC399900 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J061960 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +1.2 1186 16.4 SIN3A ZNF24 ZBTB40 SP1 ZBTB6 FOXA1 MLX RBPJ SMARCE1 POLR2A FTH1 ENSG00000279491 LOC399900 lnc-RAB3IL1-2 NXF1 WDR74 MTA2 INTS5 UBXN1 CPSF7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC399900 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC399900 gene promoter:
  • AP-1
  • GATA-1
  • LCR-F1
  • Nkx2-5
  • NRSF form 1
  • NRSF form 2
  • Pax-5
  • RP58
  • STAT1

Genomic Locations for LOC399900 Gene

Genomic Locations for LOC399900 Gene
chr11:61,967,738-61,969,275
(GRCh38/hg38)
Size:
1,538 bases
Orientation:
Plus strand

Genomic View for LOC399900 Gene

Genes around LOC399900 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC399900 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC399900 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC399900 Gene

Proteins for LOC399900 Gene

Post-translational modifications for LOC399900 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC399900 Gene

Domains & Families for LOC399900 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC399900 Gene

Function for LOC399900 Gene

Phenotypes for LOC399900 Gene

GenomeRNAi human phenotypes for LOC399900:
genes like me logo Genes that share phenotypes with LOC399900: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC399900

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC399900 Gene

Localization for LOC399900 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC399900 Gene

Pathways & Interactions for LOC399900 Gene

PathCards logo

SuperPathways for LOC399900 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC399900 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC399900 Gene

Drugs & Compounds for LOC399900 Gene

No Compound Related Data Available

Transcripts for LOC399900 Gene

mRNA/cDNA for LOC399900 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC399900

Alternative Splicing Database (ASD) splice patterns (SP) for LOC399900 Gene

No ASD Table

Relevant External Links for LOC399900 Gene

GeneLoc Exon Structure for
LOC399900

Expression for LOC399900 Gene

SOURCE GeneReport for Unigene cluster for LOC399900 Gene:

Hs.528437
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC399900 Gene

Orthologs for LOC399900 Gene

No data available for Orthologs and Evolution for LOC399900 Gene

Paralogs for LOC399900 Gene

No data available for Paralogs for LOC399900 Gene

Variants for LOC399900 Gene

Sequence variations from dbSNP and Humsavar for LOC399900 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs387906549 pathogenic, Hemochromatosis type 5 61,967,589(+) T/A upstream_transcript_variant
rs751983239 uncertain-significance, Iron Overload 61,967,427(+) G/A upstream_transcript_variant
rs763318260 uncertain-significance, Iron Overload 61,967,646(+) C/T upstream_transcript_variant
rs886048433 uncertain-significance, Iron Overload 61,967,629(+) T/C upstream_transcript_variant
rs886048434 uncertain-significance, Iron Overload 61,967,656(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC399900 Gene

Disorders for LOC399900 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC399900 Gene - From: GeneCards

Disorder Aliases PubMed IDs
hemochromatosis, type 5
  • hfe5
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC399900: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC399900 Gene

Publications for LOC399900 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC399900 Gene

Products for LOC399900 Gene

Sources for LOC399900 Gene