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Aliases for LOC392787 Gene

Aliases for LOC392787 Gene

  • Filamin C Pseudogene 3
  • AC025594.1 5

External Ids for LOC392787 Gene

Previous GeneCards Identifiers for LOC392787 Gene

  • GC07U900305
  • GC07Mh27566
  • GC07Mh28146
  • GC07M128146
  • GC07M128339
  • GC07M128553

Summaries for LOC392787 Gene

GeneCards Summary for LOC392787 Gene

LOC392787 (Filamin C Pseudogene) is a Pseudogene.

Additional gene information for LOC392787 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC392787 Gene

Genomics for LOC392787 Gene

GeneHancer (GH) Regulatory Elements for LOC392787 Gene

Promoters and enhancers for LOC392787 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J128826 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.8 +90.6 90635 11.9 HDGF PKNOX1 SMAD1 FOXA2 ARNT SIN3A POLR2B E2F8 FOS ZNF263 FLNC ENSG00000243679 ENSG00000230715 ENSG00000243302 NRF1 ENSG00000229413 ENSG00000271553 ENSG00000242588 TNPO3 CCDC136
GH07J128858 Enhancer 1.4 Ensembl ENCODE dbSUPER 8.7 +63.0 63032 3 HDGF HNRNPUL1 PKNOX1 ARNT YBX1 POLR2B ZNF766 CBX5 E2F8 ZNF592 ENSG00000243302 ENSG00000242588 CCDC136 ENSG00000230715 ENSG00000243679 OPN1SW TNPO3 ENSG00000229413 RPS10P15 FLNC
GH07J128936 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 5.3 -16.5 -16516 5.5 HDGF PKNOX1 SMAD1 ARID4B SIN3A IRF4 GLIS2 ZNF207 ZNF143 ATF7 IRF5 GC07P128994 GC07P128999 GC07P128987 GC07P128989 KCP ENSG00000242162 FLNC ATP6V1F FLNC-AS1
GH07J128868 Enhancer 1.1 Ensembl ENCODE 5.4 +53.4 53391 2.4 PTBP1 NFIB KLF17 KLF14 ZEB1 ZNF335 GLIS2 ZNF143 EGR2 SP3 GC07P128978 GC07P129011 ATP6V1FNB ENSG00000230715 LOC392787 METTL2B KCP
GH07J128850 Enhancer 0.6 dbSUPER 9.8 +69.4 69429 5.5 ZIC2 MITF GLIS2 ZFHX2 GLIS1 RBM22 ZFP36 ZBTB33 EGR2 LOC392787 IRF5 FLNC-AS1 FLNC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC392787 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC392787 Gene

Genomic Locations for LOC392787 Gene
chr7:128,912,660-128,923,070
(GRCh38/hg38)
Size:
10,411 bases
Orientation:
Minus strand
chr7:128,552,714-128,563,124
(GRCh37/hg19)
Size:
10,411 bases
Orientation:
Minus strand

Genomic View for LOC392787 Gene

Genes around LOC392787 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC392787 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC392787 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC392787 Gene

Proteins for LOC392787 Gene

  • Protein details for LOC392787 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A4D1J9-A4D1J9_HUMAN
    Recommended name:
    Similar to Filamin C (Gamma-filamin) (Filamin 2) (Protein FLNc) (Actin-binding like protein) (ABP-L) (ABP-280-like protein)
    Protein Accession:
    A4D1J9

    Protein attributes for LOC392787 Gene

    Size:
    306 amino acids
    Molecular mass:
    32808 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC392787 Gene

Post-translational modifications for LOC392787 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC392787 Gene

Domains & Families for LOC392787 Gene

Protein Domains for LOC392787 Gene

Suggested Antigen Peptide Sequences for LOC392787 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC392787: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC392787 Gene

Function for LOC392787 Gene

Phenotypes From GWAS Catalog for LOC392787 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC392787 Gene

Localization for LOC392787 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC392787 Gene

Pathways & Interactions for LOC392787 Gene

SuperPathways for LOC392787 Gene

No Data Available

Interacting Proteins for LOC392787 Gene

Gene Ontology (GO) - Biological Process for LOC392787 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC392787 Gene

Drugs & Compounds for LOC392787 Gene

No Compound Related Data Available

Transcripts for LOC392787 Gene

mRNA/cDNA for LOC392787 Gene

(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC392787 Gene

No ASD Table

Relevant External Links for LOC392787 Gene

GeneLoc Exon Structure for
LOC392787

Expression for LOC392787 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC392787 Gene

mRNA differential expression in normal tissues according to GTEx for LOC392787 Gene

This gene is overexpressed in Heart - Left Ventricle (x30.8) and Muscle - Skeletal (x14.5).

Protein differential expression in normal tissues from HIPED for LOC392787 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC392787 Gene



Protein tissue co-expression partners for LOC392787 Gene

genes like me logo Genes that share expression patterns with LOC392787: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC392787 Gene

Orthologs for LOC392787 Gene

Evolution for LOC392787 Gene

ENSEMBL:
Gene Tree for LOC392787 (if available)
TreeFam:
Gene Tree for LOC392787 (if available)

No data available for Orthologs for LOC392787 Gene

Paralogs for LOC392787 Gene

(2) SIMAP similar genes for LOC392787 Gene using alignment to 1 proteins:

  • A4D1J9_HUMAN
genes like me logo Genes that share paralogs with LOC392787: view

No data available for Paralogs for LOC392787 Gene

Variants for LOC392787 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC392787 Gene

Disorders for LOC392787 Gene

No disorders were found for LOC392787 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC392787 Gene

Publications for LOC392787 Gene

  1. DNA sequencing errors in molecular diagnostics of filamin myopathy. (PMID: 20578970) Odgerel Z … Goldfarb LG (Clinical chemistry and laboratory medicine 2010) 3 58
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 58

Products for LOC392787 Gene

Sources for LOC392787 Gene

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