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Aliases for LOC392180 Gene

Subcategory (RNA class) for LOC392180 Gene

lncRNA

Aliases for LOC392180 Gene

  • Transcriptional Adaptor 1 Pseudogene 3
  • Transcriptional Adaptor 1 (TADA1) Pseudogene 5
  • AC087369.1 5

External Ids for LOC392180 Gene

ORGUL Members for LOC392180 Gene

Previous GeneCards Identifiers for LOC392180 Gene

  • GC08U900234
  • GC08P005694
  • GC08P005695

Summaries for LOC392180 Gene

GeneCards Summary for LOC392180 Gene

LOC392180 (Transcriptional Adaptor 1 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC392180 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC392180 Gene

Genomics for LOC392180 Gene

GeneHancer (GH) Regulatory Elements for LOC392180 Gene

Promoters and enhancers for LOC392180 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J005806 Enhancer 0.6 Ensembl ENCODE 0.3 -41.0 -41048 1.5 CEBPG CEBPB LOC392180 PIR52898
GH08J005809 Enhancer 0.2 Ensembl 0.3 -39.5 -39496 0.4 LOC392180 PIR52898
GH08J005737 Enhancer 0.2 Ensembl 0.1 -111.4 -111396 0.2 PIR52898 LOC392180
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC392180 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC392180 Gene

Genomic Locations for LOC392180 Gene
chr8:5,848,697-5,849,692
(GRCh38/hg38)
Size:
996 bases
Orientation:
Plus strand
chr8:5,706,219-5,707,214
(GRCh37/hg19)
Size:
996 bases
Orientation:
Plus strand

Genomic View for LOC392180 Gene

Genes around LOC392180 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC392180 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC392180 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC392180 Gene

Proteins for LOC392180 Gene

Post-translational modifications for LOC392180 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC392180 Gene

Domains & Families for LOC392180 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC392180 Gene

Function for LOC392180 Gene

Phenotypes From GWAS Catalog for LOC392180 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC392180 Gene

Localization for LOC392180 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC392180 Gene

Pathways & Interactions for LOC392180 Gene

PathCards logo

SuperPathways for LOC392180 Gene

No Data Available

Interacting Proteins for LOC392180 Gene

Gene Ontology (GO) - Biological Process for LOC392180 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC392180 Gene

Drugs & Compounds for LOC392180 Gene

No Compound Related Data Available

Transcripts for LOC392180 Gene

mRNA/cDNA for LOC392180 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC392180 Gene

No ASD Table

Relevant External Links for LOC392180 Gene

GeneLoc Exon Structure for
LOC392180

Expression for LOC392180 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC392180 Gene

genes like me logo Genes that share expression patterns with LOC392180: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC392180 Gene

Orthologs for LOC392180 Gene

Evolution for LOC392180 Gene

ENSEMBL:
Gene Tree for LOC392180 (if available)
TreeFam:
Gene Tree for LOC392180 (if available)

No data available for Orthologs for LOC392180 Gene

Paralogs for LOC392180 Gene

No data available for Paralogs for LOC392180 Gene

Variants for LOC392180 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC392180 Gene

Disorders for LOC392180 Gene

No disorders were found for LOC392180 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC392180 Gene

Publications for LOC392180 Gene

No publications were found for LOC392180 Gene.

No data available for External Links for LOC392180 Gene

Products for LOC392180 Gene

Sources for LOC392180 Gene

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