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Aliases for LOC391636 Gene

Aliases for LOC391636 Gene

  • Chromosome 9 Open Reading Frame 78 Pseudogene 3
  • Chromosome 9 Open Reading Frame 78 (C9orf78) Pseudogene 5
  • AC095052.1 5

External Ids for LOC391636 Gene

Previous GeneCards Identifiers for LOC391636 Gene

  • GC04U900291
  • GC04P013706
  • GC04P013655

Summaries for LOC391636 Gene

GeneCards Summary for LOC391636 Gene

LOC391636 (Chromosome 9 Open Reading Frame 78 Pseudogene) is a Pseudogene.

Additional gene information for LOC391636 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC391636 Gene

Genomics for LOC391636 Gene

GeneHancer (GH) Regulatory Elements for LOC391636 Gene

Promoters and enhancers for LOC391636 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J013984 Enhancer 0.9 Ensembl ENCODE dbSUPER 4.7 +8.6 8635 2.4 CREB1 ATF2 USF1 USF2 LOC391636 GC04P013990
GH04J013980 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.7 +3.4 3448 1 POLR2A FOS JUND LOC391636 GC04P013990
GH04J013987 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +12.9 12930 4.6 ZNF652 MAFK SP1 HNF1A ZNF384 RXRA NFE2L2 CEBPA GATAD2A REST GC04P013990 LOC391636
GH04J013966 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -10.4 -10365 1.6 ATF7 NR2F2 JUND ATF2 LOC391636 PIR47578 LINC01182
GH04J013981 Enhancer 0.6 FANTOM5 ENCODE dbSUPER 0.4 +5.1 5070 0.7 LOC391636 GC04P013990
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC391636 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC391636 gene promoter:
  • AREB6
  • CUTL1
  • IRF-7A
  • ISGF-3
  • p300
  • POU3F2
  • POU3F2 (N-Oct-5a)
  • POU3F2 (N-Oct-5b)
  • YY1

Genomic Locations for LOC391636 Gene

Genomic Locations for LOC391636 Gene
chr4:13,977,166-13,978,028
(GRCh38/hg38)
Size:
863 bases
Orientation:
Plus strand
chr4:13,978,790-13,979,828
(GRCh37/hg19)
Size:
1,039 bases
Orientation:
Plus strand

Genomic View for LOC391636 Gene

Genes around LOC391636 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC391636 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC391636 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC391636 Gene

Proteins for LOC391636 Gene

Post-translational modifications for LOC391636 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC391636 Gene

Domains & Families for LOC391636 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC391636 Gene

Function for LOC391636 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC391636 Gene

Localization for LOC391636 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC391636 Gene

Pathways & Interactions for LOC391636 Gene

PathCards logo

SuperPathways for LOC391636 Gene

No Data Available

Interacting Proteins for LOC391636 Gene

Gene Ontology (GO) - Biological Process for LOC391636 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC391636 Gene

Drugs & Compounds for LOC391636 Gene

No Compound Related Data Available

Transcripts for LOC391636 Gene

mRNA/cDNA for LOC391636 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC391636 Gene

No ASD Table

Relevant External Links for LOC391636 Gene

GeneLoc Exon Structure for
LOC391636

Expression for LOC391636 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC391636 Gene

mRNA differential expression in normal tissues according to GTEx for LOC391636 Gene

This gene is overexpressed in Testis (x13.3), Kidney - Cortex (x4.4), and Brain - Putamen (basal ganglia) (x4.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC391636 Gene



Protein tissue co-expression partners for LOC391636 Gene

genes like me logo Genes that share expression patterns with LOC391636: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC391636 Gene

Orthologs for LOC391636 Gene

Evolution for LOC391636 Gene

ENSEMBL:
Gene Tree for LOC391636 (if available)
TreeFam:
Gene Tree for LOC391636 (if available)

No data available for Orthologs for LOC391636 Gene

Paralogs for LOC391636 Gene

No data available for Paralogs for LOC391636 Gene

Variants for LOC391636 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC391636 Gene

Disorders for LOC391636 Gene

No disorders were found for LOC391636 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC391636 Gene

Publications for LOC391636 Gene

No publications were found for LOC391636 Gene.

No data available for External Links for LOC391636 Gene

Products for LOC391636 Gene

Sources for LOC391636 Gene

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