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Aliases for LOC390937 Gene

Aliases for LOC390937 Gene

  • Ets2 Repressor Factor-Like 3
  • ETS Domain-Containing Transcription Factor ERF 3
  • AC010616.1 5

External Ids for LOC390937 Gene

Previous GeneCards Identifiers for LOC390937 Gene

  • GC19U900332
  • GC19M047104
  • GC19M042412

Summaries for LOC390937 Gene

GeneCards Summary for LOC390937 Gene

LOC390937 (Ets2 Repressor Factor-Like) is a Protein Coding gene. An important paralog of this gene is ERF.

Additional gene information for LOC390937 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC390937 Gene

Genomics for LOC390937 Gene

GeneHancer (GH) Regulatory Elements for LOC390937 Gene

Promoters and enhancers for LOC390937 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J041928 Promoter/Enhancer 1.5 Ensembl ENCODE 650.7 -0.5 -453 1.5 HDGF ARNT SIN3A ZNF2 POLR2B ZNF766 E2F8 ZNF143 ZNF263 SP3 LOC390937 LOC100505585 ZNF526 ZNF574 HNRNPUL1 CCDC97 RABAC1 CIC ARHGEF1
GH19J041930 Enhancer 0.8 ENCODE 650.7 -1.9 -1888 0.2 HDAC1 ATF1 E4F1 MTA3 DIDO1 FOXK2 POLR2A ADNP ZNF600 ATF7 LOC100505585 LOC390937 RABAC1
GH19J041929 Enhancer 0.7 ENCODE 650.7 -1.5 -1508 0.2 BCOR ZSCAN18 PTBP1 ATF1 ZMYM3 PHF20 ADNP EZH2 SMARCA5 ZSCAN21 LOC100505585 LOC390937 RABAC1 ARHGEF1
GH19J041882 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 6.1 +41.9 41857 9.2 MLX FEZF1 DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF548 ARHGEF1 ZNF526 CCDC97 HNRNPUL1 ZNF574 RPS19 RABAC1 ENSG00000271299 CEACAMP1 CYP2G2P
GH19J041893 Enhancer 1 ENCODE dbSUPER 6.2 +33.9 33857 1.4 HDGF ZSCAN4 ARID4B KLF17 SIN3A RAD21 RARA ZNF366 ZNF143 KLF7 RPS19 HNRNPUL1 ZNF526 CCDC97 ENSG00000269652 LOC390937 PCAT19 PLEKHA3P1 ARHGEF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC390937 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC390937 gene promoter:

Genomic Locations for LOC390937 Gene

Genomic Locations for LOC390937 Gene
chr19:41,907,535-41,928,516
(GRCh38/hg38)
Size:
20,982 bases
Orientation:
Minus strand
chr19:42,412,380-42,417,071
(GRCh37/hg19)

Genomic View for LOC390937 Gene

Genes around LOC390937 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC390937 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC390937 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC390937 Gene

Proteins for LOC390937 Gene

  • Protein details for LOC390937 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1W2PQ73-A0A1W2PQ73_HUMAN
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A1W2PQ73

    Protein attributes for LOC390937 Gene

    Size:
    354 amino acids
    Molecular mass:
    37790 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC390937 Gene

Post-translational modifications for LOC390937 Gene

No Post-translational modifications

Other Protein References for LOC390937 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LOC390937 Gene

Domains & Families for LOC390937 Gene

Gene Families for LOC390937 Gene

Unknown:
  • Belongs to the ETS family.

Protein Domains for LOC390937 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC390937: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC390937 Gene

Function for LOC390937 Gene

Gene Ontology (GO) - Molecular Function for LOC390937 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003700 DNA binding transcription factor activity IEA --
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with LOC390937: view

Phenotypes for LOC390937 Gene

genes like me logo Genes that share phenotypes with LOC390937: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC390937 Gene

Localization for LOC390937 Gene

Gene Ontology (GO) - Cellular Components for LOC390937 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with LOC390937: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LOC390937 Gene

Pathways & Interactions for LOC390937 Gene

SuperPathways for LOC390937 Gene

No Data Available

Interacting Proteins for LOC390937 Gene

Gene Ontology (GO) - Biological Process for LOC390937 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with LOC390937: view

No data available for Pathways by source and SIGNOR curated interactions for LOC390937 Gene

Drugs & Compounds for LOC390937 Gene

No Compound Related Data Available

Transcripts for LOC390937 Gene

mRNA/cDNA for LOC390937 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC390937 Gene

No ASD Table

Relevant External Links for LOC390937 Gene

GeneLoc Exon Structure for
LOC390937

Expression for LOC390937 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC390937 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for LOC390937 Gene

This gene is overexpressed in Spleen (x5.1), Whole Blood (x4.6), and Small Intestine - Terminal Ileum (x4.4).
genes like me logo Genes that share expression patterns with LOC390937: view

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC390937 Gene

Orthologs for LOC390937 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LOC390937 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm4881 16 33
  • 89.49 (n)
rat
(Rattus norvegicus)
Mammalia RGD1563034 33
  • 89.05 (n)
cow
(Bos Taurus)
Mammalia LOC101907940 33
  • 88.79 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485654 33
  • 64.34 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC558126 33
  • 68.71 (n)
Species where no ortholog for LOC390937 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LOC390937 Gene

ENSEMBL:
Gene Tree for LOC390937 (if available)
TreeFam:
Gene Tree for LOC390937 (if available)

Paralogs for LOC390937 Gene

Paralogs for LOC390937 Gene

genes like me logo Genes that share paralogs with LOC390937: view

Variants for LOC390937 Gene

Sequence variations from dbSNP and Humsavar for LOC390937 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000076635 -- 41,917,743(-) G/A intron_variant
rs1000236192 -- 41,926,648(-) G/A intron_variant
rs1000568600 -- 41,925,174(-) C/T intron_variant
rs1001115757 -- 41,919,329(-) T/C intron_variant
rs1001188354 -- 41,927,692(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC390937 Gene

Disorders for LOC390937 Gene

No disorders were found for LOC390937 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC390937 Gene

Publications for LOC390937 Gene

  1. Importin 8 is a gene silencing factor that targets argonaute proteins to distinct mRNAs. (PMID: 19167051) Weinmann L … Meister G (Cell 2009) 3 58

Products for LOC390937 Gene

Sources for LOC390937 Gene

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