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Aliases for LOC390705 Gene

Aliases for LOC390705 Gene

  • Protein Phosphatase 2 Regulatory Subunit B'', Beta Pseudogene 3
  • AC133548.2 5

External Ids for LOC390705 Gene

Previous GeneCards Identifiers for LOC390705 Gene

  • GC16U900419
  • GC16M033332
  • GC16M032208

Summaries for LOC390705 Gene

GeneCards Summary for LOC390705 Gene

LOC390705 (Protein Phosphatase 2 Regulatory Subunit B'', Beta Pseudogene) is a Pseudogene.

Additional gene information for LOC390705 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC390705 Gene

Genomics for LOC390705 Gene

GeneHancer (GH) Regulatory Elements for LOC390705 Gene


Top Transcription factor binding sites by QIAGEN in the LOC390705 gene promoter:
  • HFH-1
  • Evi-1
  • Arnt
  • AhR
  • LUN-1
  • FOXO3
  • FOXO3a
  • FOXO3b
  • HNF-1A

Genomic Locations for LOC390705 Gene

Genomic Locations for LOC390705 Gene
chr16:32,289,547-32,310,555
(GRCh38/hg38)
Size:
21,009 bases
Orientation:
Minus strand
chr16:32,300,868-32,321,876
(GRCh37/hg19)
Size:
21,009 bases
Orientation:
Minus strand

Genomic View for LOC390705 Gene

Genes around LOC390705 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC390705 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC390705 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC390705 Gene

Proteins for LOC390705 Gene

Post-translational modifications for LOC390705 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC390705 Gene

Domains & Families for LOC390705 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC390705 Gene

Function for LOC390705 Gene

genes like me logo Genes that share phenotypes with LOC390705: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC390705 Gene

Localization for LOC390705 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC390705 Gene

Pathways & Interactions for LOC390705 Gene

SuperPathways for LOC390705 Gene

No Data Available

Interacting Proteins for LOC390705 Gene

Gene Ontology (GO) - Biological Process for LOC390705 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC390705 Gene

Drugs & Compounds for LOC390705 Gene

No Compound Related Data Available

Transcripts for LOC390705 Gene

mRNA/cDNA for LOC390705 Gene

(2) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC390705 Gene

Protein phosphatase 2, regulatory subunit B, beta pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC390705 Gene

No ASD Table

Relevant External Links for LOC390705 Gene

GeneLoc Exon Structure for
LOC390705

Expression for LOC390705 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC390705 Gene

mRNA differential expression in normal tissues according to GTEx for LOC390705 Gene

This gene is overexpressed in Testis (x50.5).

SOURCE GeneReport for Unigene cluster for LOC390705 Gene:

Hs.278513
genes like me logo Genes that share expression patterns with LOC390705: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC390705 Gene

Orthologs for LOC390705 Gene

Evolution for LOC390705 Gene

ENSEMBL:
Gene Tree for LOC390705 (if available)
TreeFam:
Gene Tree for LOC390705 (if available)

No data available for Orthologs for LOC390705 Gene

Paralogs for LOC390705 Gene

No data available for Paralogs for LOC390705 Gene

Variants for LOC390705 Gene

Sequence variations from dbSNP and Humsavar for LOC390705 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1003373746 -- 32,291,242(-) C/T upstream_transcript_variant
rs1010464087 -- 32,291,165(-) C/T upstream_transcript_variant
rs1010640176 -- 32,290,284(-) CCACCAC/CCAC upstream_transcript_variant
rs1020392265 -- 32,290,286(-) A/T upstream_transcript_variant
rs1020719110 -- 32,291,170(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC390705 Gene

Variant ID Type Subtype PubMed ID
nsv978137 CNV duplication 23825009
nsv977963 CNV duplication 23825009
nsv952325 CNV duplication 24416366
nsv9439 CNV gain+loss 18304495
nsv833202 CNV gain 17160897
nsv833199 CNV loss 17160897
nsv821684 CNV gain 15273396
nsv7282 OTHER inversion 18451855
nsv7281 OTHER inversion 18451855
nsv572204 CNV loss 21841781
nsv571838 CNV loss 21841781
nsv571836 CNV loss 21841781
nsv571835 CNV loss 21841781
nsv571834 CNV loss 21841781
nsv527583 CNV gain 19592680
nsv520222 CNV loss 19592680
nsv511048 OTHER complex 20534489
nsv510684 CNV deletion 20534489
nsv509612 CNV insertion 20534489
nsv471500 CNV gain 19718026
nsv442720 CNV gain+loss 18776908
nsv436841 CNV insertion 17901297
nsv433444 CNV gain 18776910
nsv428325 CNV gain+loss 18775914
nsv1790 CNV deletion 18451855
nsv1789 CNV insertion 18451855
nsv142 CNV insertion 15895083
nsv1160413 CNV duplication 26073780
nsv1160412 OTHER complex 26073780
nsv1160406 CNV duplication 26073780
nsv1160389 OTHER complex 26073780
nsv1146576 CNV duplication 26484159
nsv1146300 CNV duplication 26484159
nsv1141285 CNV duplication 24896259
nsv1124737 CNV duplication 24896259
nsv1078885 OTHER inversion 25765185
nsv1070762 CNV deletion 25765185
nsv1064477 CNV loss 25217958
nsv1064426 CNV gain+loss 25217958
nsv1064239 CNV loss 25217958
nsv1063376 CNV loss 25217958
nsv1062513 CNV gain+loss 25217958
nsv1060577 CNV loss 25217958
nsv1057653 CNV gain 25217958
nsv1056035 CNV gain 25217958
esv3892846 CNV gain 25118596
esv3892842 CNV gain+loss 25118596
esv3892840 CNV gain 25118596
esv3892833 CNV gain 25118596
esv3584926 CNV gain 24956385
esv3584708 CNV loss 24956385
esv3570542 CNV gain 25503493
esv3418928 CNV duplication 20981092
esv3379913 CNV duplication 20981092
esv33069 CNV loss 17666407
esv29952 CNV gain 18421352
esv2929345 CNV duplication 24192839
esv2922679 CNV duplication 24192839
esv2714201 CNV deletion 23290073
esv27116 CNV gain+loss 19812545
esv24815 CNV gain+loss 19812545
esv2421440 OTHER complex 20811451
dgv823e212 CNV loss 25503493
dgv822e212 CNV gain 25503493
dgv821e212 CNV gain 25503493
dgv817e212 CNV loss 25503493
dgv816e212 CNV loss 25503493
dgv815e212 CNV loss 25503493
dgv814e212 CNV gain 25503493
dgv50e203 CNV gain+loss 21179565
dgv5049n54 CNV gain 21841781
dgv4992n54 CNV gain 21841781
dgv4991n54 CNV gain 21841781
dgv491e199 CNV deletion 23128226
dgv336e201 CNV deletion 23290073
dgv2905n100 CNV gain 25217958
dgv2904n100 CNV loss 25217958
dgv2903n100 CNV gain+loss 25217958
dgv2902n100 CNV gain 25217958
dgv2901n100 CNV gain+loss 25217958
dgv2900n100 CNV gain 25217958
dgv2899n100 CNV loss 25217958
dgv2898n100 CNV gain 25217958
dgv2897n100 CNV gain+loss 25217958
dgv2896n100 CNV loss 25217958
dgv2882n100 CNV gain 25217958
dgv2876n100 CNV loss 25217958
dgv2874n100 CNV loss 25217958
dgv2873n100 CNV gain 25217958
dgv2872n100 CNV gain+loss 25217958
dgv2871n100 CNV gain 25217958
dgv2862n100 CNV loss 25217958
dgv2861n100 CNV loss 25217958
dgv2860n100 CNV gain+loss 25217958
dgv2859n100 CNV loss 25217958
dgv2858n100 CNV gain+loss 25217958
dgv2857n100 CNV loss 25217958
dgv2856n100 CNV gain 25217958
dgv2855n100 CNV loss 25217958
dgv2854n100 CNV gain 25217958
dgv2853n100 CNV loss 25217958
dgv2852n100 CNV gain+loss 25217958
dgv2851n100 CNV gain 25217958
dgv2850n100 CNV loss 25217958
dgv2849n100 CNV loss 25217958
dgv2848n100 CNV gain+loss 25217958
dgv2847n100 CNV gain+loss 25217958
dgv2846n100 CNV gain+loss 25217958
dgv2845n100 CNV gain 25217958
dgv2844n100 CNV gain+loss 25217958
dgv2843n100 CNV gain 25217958
dgv2842n100 CNV loss 25217958
dgv2841n100 CNV loss 25217958
dgv2840n100 CNV gain 25217958
dgv2839n100 CNV gain 25217958
dgv2838n100 CNV gain 25217958
dgv2837n100 CNV loss 25217958
dgv2836n100 CNV gain 25217958
dgv2835n100 CNV loss 25217958
dgv1558e59 CNV duplication 20981092
dgv1557e59 CNV duplication 20981092
dgv1523e59 CNV duplication 20981092
dgv121n111 CNV duplication 26073780
dgv120n111 CNV duplication 26073780
dgv119n111 CNV duplication 26073780

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC390705 Gene

Disorders for LOC390705 Gene

Additional Disease Information for LOC390705

No disorders were found for LOC390705 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC390705 Gene

Publications for LOC390705 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC390705 Gene

Sources for LOC390705 Gene

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