Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC390282 Gene

Aliases for LOC390282 Gene

  • Eukaryotic Translation Initiation Factor 3 Subunit F Pseudogene 3
  • Eukaryotic Translation Initiation Factor 3, Subunit F (EIF3F) Pseudogene 5
  • AC005906.1 5

External Ids for LOC390282 Gene

Previous GeneCards Identifiers for LOC390282 Gene

  • GC12U900241
  • GC12M005012
  • GC12M005141

Summaries for LOC390282 Gene

GeneCards Summary for LOC390282 Gene

LOC390282 (Eukaryotic Translation Initiation Factor 3 Subunit F Pseudogene) is a Pseudogene.

Additional gene information for LOC390282 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC390282 Gene

Genomics for LOC390282 Gene

GeneHancer (GH) Regulatory Elements for LOC390282 Gene

Promoters and enhancers for LOC390282 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J005032 Enhancer 0.7 Ensembl dbSUPER 600.7 -1.4 -1360 1.8 CREM EED JUNB BATF LOC390282 KCNA5
GH12J005022 Enhancer 0.8 Ensembl ENCODE 0.4 +10.3 10340 0.4 CTCF RAD21 RELA LARP7 TRIM22 SMC3 IRF4 ZNF654 ZNF143 SIN3A KCNA5 LOC100507560 LOC390282 ENSG00000256654
GH12J005026 Enhancer 0.5 Ensembl dbSUPER 0.4 +5.8 5840 1.8 EZH2 KCNA1 LOC390282 LOC100507560
GH12J005041 Enhancer 0.4 Ensembl dbSUPER 0.4 -9.6 -9560 1.4 KCNA5 LOC390282
GH12J005017 Enhancer 0.4 Ensembl 0.4 +14.9 14940 0.4 PKNOX1 NRF1 LOC100507560 KCNA5 LOC390282 ENSG00000256654
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC390282 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC390282 gene promoter:
  • AP-2alpha
  • AP-2alphaA
  • AP-2beta
  • AP-2gamma
  • GR
  • GR-alpha
  • GR-beta
  • LyF-1
  • Nkx6-1
  • Pax-5

Genomic Locations for LOC390282 Gene

Genomic Locations for LOC390282 Gene
chr12:5,032,388-5,032,941
(GRCh38/hg38)
Size:
554 bases
Orientation:
Minus strand
chr12:5,141,554-5,142,115
(GRCh37/hg19)
Size:
562 bases
Orientation:
Minus strand

Genomic View for LOC390282 Gene

Genes around LOC390282 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC390282 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC390282 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC390282 Gene

Proteins for LOC390282 Gene

Post-translational modifications for LOC390282 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC390282 Gene

Domains & Families for LOC390282 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC390282 Gene

Function for LOC390282 Gene

Phenotypes From GWAS Catalog for LOC390282 Gene

Phenotypes for LOC390282 Gene

genes like me logo Genes that share phenotypes with LOC390282: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC390282 Gene

Localization for LOC390282 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC390282 Gene

Pathways & Interactions for LOC390282 Gene

PathCards logo

SuperPathways for LOC390282 Gene

No Data Available

Interacting Proteins for LOC390282 Gene

Gene Ontology (GO) - Biological Process for LOC390282 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC390282 Gene

Drugs & Compounds for LOC390282 Gene

No Compound Related Data Available

Transcripts for LOC390282 Gene

mRNA/cDNA for LOC390282 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC390282 Gene

No ASD Table

Relevant External Links for LOC390282 Gene

GeneLoc Exon Structure for
LOC390282

Expression for LOC390282 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC390282 Gene

genes like me logo Genes that share expression patterns with LOC390282: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC390282 Gene

Orthologs for LOC390282 Gene

Evolution for LOC390282 Gene

ENSEMBL:
Gene Tree for LOC390282 (if available)
TreeFam:
Gene Tree for LOC390282 (if available)

No data available for Orthologs for LOC390282 Gene

Paralogs for LOC390282 Gene

No data available for Paralogs for LOC390282 Gene

Variants for LOC390282 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC390282 Gene

Disorders for LOC390282 Gene

No disorders were found for LOC390282 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC390282 Gene

Publications for LOC390282 Gene

No publications were found for LOC390282 Gene.

No data available for External Links for LOC390282 Gene

Products for LOC390282 Gene

Sources for LOC390282 Gene

Content
Loading form....