LOC390251 Gene (Pseudogene)

SH3 Domain Containing GRB2 Like 1, Endophilin A2 Pseudogene

GC11P113849
GIFtS:
3
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Aliases for LOC390251 Gene

Aliases for LOC390251 Gene

  • SH3 Domain Containing GRB2 Like 1, Endophilin A2 Pseudogene 3
  • SH3 Domain Containing GRB2 Like 1 Pseudogene 3

External Ids for LOC390251 Gene

Previous GeneCards Identifiers for LOC390251 Gene

  • GC11U900454
  • GC11P113199
  • GC11P113155
  • GC11P113167
  • GC11P113659
  • GC11P113792
  • GC11P113797
  • GC11P113829
  • GC11P113832
  • GC11P113835
  • GC11P113841
  • GC11P113800
  • GC11P113803
  • GC11P113806
  • GC11P113811
  • GC11P113814
  • GC11P113820
  • GC11P113823
  • GC11P113825

Summaries for LOC390251 Gene

GeneCards Summary for LOC390251 Gene

LOC390251 (SH3 Domain Containing GRB2 Like 1, Endophilin A2 Pseudogene) is a Pseudogene.

Additional gene information for LOC390251 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC390251 Gene

Genomics for LOC390251 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC390251 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J113790 Promoter 0.3 Ensembl 600.7 +1.6 1563 1.4 ATF4P4 LRRC37A13P ENSG00000255870 LOC390251 lnc-CLDN25-3 lnc-CLDN25-4 piR-42218-001 piR-51210 RNU6-1107P CLDN25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC390251 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC390251 gene promoter:
  • CUTL1
  • Evi-1
  • GATA-2
  • HNF-1
  • HNF-1A
  • Lmo2
  • POU2F1
  • POU2F1a
  • USF-1
  • USF1

Genomic Locations for LOC390251 Gene

Genomic Locations for LOC390251 Gene
chr11:113,789,138-113,789,997
(GRCh38/hg38)
Size:
860 bases
Orientation:
Plus strand
chr11:113,659,809-113,660,819
(GRCh37/hg19)
Size:
1,011 bases
Orientation:
Plus strand

Genomic View for LOC390251 Gene

Genes around LOC390251 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC390251 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC390251 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC390251 Gene

Proteins for LOC390251 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC390251 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC390251 Gene

Domains & Families for LOC390251 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC390251 Gene

Function for LOC390251 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC390251 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC390251 Gene

Localization for LOC390251 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC390251 Gene

Pathways & Interactions for LOC390251 Gene

PathCards logo

SuperPathways for LOC390251 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC390251 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC390251 Gene

Drugs & Compounds for LOC390251 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC390251 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC390251 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC390251 Gene

No ASD Table

Relevant External Links for LOC390251 Gene

GeneLoc Exon Structure for
LOC390251

Expression for LOC390251 Gene

Products:

  1. Primer
  2. Gene Expression Assay

SOURCE GeneReport for Unigene cluster for LOC390251 Gene:

Hs.636639
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC390251 Gene

Orthologs for LOC390251 Gene

No data available for Orthologs and Evolution for LOC390251 Gene

Paralogs for LOC390251 Gene

No data available for Paralogs for LOC390251 Gene

Variants for LOC390251 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC390251 Gene

Disorders for LOC390251 Gene

No disorders were found for LOC390251 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC390251 Gene

Publications for LOC390251 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC390251 Gene

Products for LOC390251 Gene

Sources for LOC390251 Gene