Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC389906 Gene

Aliases for LOC389906 Gene

  • Zinc Finger Protein 839 Pseudogene 3
  • BX890604.1 5

External Ids for LOC389906 Gene

Previous GeneCards Identifiers for LOC389906 Gene

  • GC0XU900384
  • GC0XP9O0046
  • GC0XM003745
  • GC0XM003749
  • GC0XM001683

Summaries for LOC389906 Gene

GeneCards Summary for LOC389906 Gene

LOC389906 (Zinc Finger Protein 839 Pseudogene) is a Pseudogene.

Additional gene information for LOC389906 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC389906 Gene

Genomics for LOC389906 Gene

GeneHancer (GH) Regulatory Elements for LOC389906 Gene

Promoters and enhancers for LOC389906 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI003842 Promoter 0.7 Ensembl 550.8 +0.6 593 2.2 GABPB1 ZFX LOC389906 GC0XM003867 TRI-GAT1-1
GH0XI003813 Enhancer 1.6 FANTOM5 Ensembl ENCODE 6.6 +28.0 28038 4.5 HDGF PKNOX1 FOXA2 SMAD1 ARID4B SIN3A YY1 POLR2B E2F8 ZNF207 FAM239B PRKX LOC389906 GC0XP003806 GC0XM003867 TRI-GAT1-1
GH0XI003811 Enhancer 1 Ensembl ENCODE 5.6 +31.8 31754 0.5 CTCF PKNOX1 SMAD1 BACH1 EBF1 BMI1 BATF IRF4 RAD21 RELA FAM239B LOC389906 GC0XP003806 GC0XM003867 TRI-GAT1-1
GH0XI003819 Enhancer 0.4 ENCODE 7.8 +23.5 23509 1.1 JUND FOS FAM239B LOC389906 GC0XP003806 GC0XM003867 TRI-GAT1-1
GH0XI004181 Enhancer 0.3 ENCODE 4.5 -338.4 -338356 1.7 STAT1 FAM239B FAM239C LOC389906 PIR42712 RPL24P9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC389906 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC389906 gene promoter:

Genomic Locations for LOC389906 Gene

Genomic Locations for LOC389906 Gene
chrX:3,817,528-3,843,894
(GRCh38/hg38)
Size:
26,367 bases
Orientation:
Minus strand
chrX:3,735,569-3,761,935
(GRCh37/hg19)

Genomic View for LOC389906 Gene

Genes around LOC389906 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC389906 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC389906 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC389906 Gene

Proteins for LOC389906 Gene

  • Protein details for LOC389906 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q6PJD4
    Recommended name:
    LOC389906 protein
    Protein Accession:
    Q6PJD4

    Protein attributes for LOC389906 Gene

    Size:
    202 amino acids
    Molecular mass:
    21241 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC389906 Gene

Post-translational modifications for LOC389906 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC389906 Gene

Domains & Families for LOC389906 Gene

Protein Domains for LOC389906 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC389906 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC389906: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC389906 Gene

Function for LOC389906 Gene

genes like me logo Genes that share phenotypes with LOC389906: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC389906 Gene

Localization for LOC389906 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC389906 Gene

Pathways & Interactions for LOC389906 Gene

SuperPathways for LOC389906 Gene

No Data Available

Interacting Proteins for LOC389906 Gene

Gene Ontology (GO) - Biological Process for LOC389906 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC389906 Gene

Drugs & Compounds for LOC389906 Gene

No Compound Related Data Available

Transcripts for LOC389906 Gene

mRNA/cDNA for LOC389906 Gene

(1) REFSEQ mRNAs :
(10) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC389906 Gene

Zinc finger protein 839 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC389906 Gene

No ASD Table

Relevant External Links for LOC389906 Gene

GeneLoc Exon Structure for
LOC389906

Expression for LOC389906 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC389906 Gene

SOURCE GeneReport for Unigene cluster for LOC389906 Gene:

Hs.636199
genes like me logo Genes that share expression patterns with LOC389906: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC389906 Gene

Orthologs for LOC389906 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC389906 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 94 (a)
OneToOne
Species where no ortholog for LOC389906 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC389906 Gene

ENSEMBL:
Gene Tree for LOC389906 (if available)
TreeFam:
Gene Tree for LOC389906 (if available)

Paralogs for LOC389906 Gene

(1) SIMAP similar genes for LOC389906 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LOC389906: view

No data available for Paralogs for LOC389906 Gene

Variants for LOC389906 Gene

Sequence variations from dbSNP and Humsavar for LOC389906 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000295110 -- 3,821,715(-) T/C intron_variant
rs1000410762 -- 3,821,360(-) C/T intron_variant
rs1001767761 -- 3,822,527(-) A/G intron_variant
rs1002514179 -- 3,824,974(-) C/T intron_variant
rs1002772164 -- 3,826,128(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC389906 Gene

Variant ID Type Subtype PubMed ID
nsv820566 CNV deletion 20802225
nsv1141045 CNV deletion 24896259
esv3573442 CNV loss 25503493
esv22025 CNV gain+loss 19812545

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC389906 Gene

Disorders for LOC389906 Gene

Additional Disease Information for LOC389906

No disorders were found for LOC389906 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC389906 Gene

Publications for LOC389906 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC389906 Gene

Sources for LOC389906 Gene

Content
Loading form....