Aliases for LOC389705 Gene

Aliases for LOC389705 Gene

  • Histone PARylation Factor 1 Pseudogene 3

External Ids for LOC389705 Gene

Previous GeneCards Identifiers for LOC389705 Gene

  • GC09U900349
  • GC09P014987
  • GC09P014983
  • GC09P014994

Summaries for LOC389705 Gene

GeneCards Summary for LOC389705 Gene

LOC389705 (Histone PARylation Factor 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC389705 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC389705 Gene

Genomics for LOC389705 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC389705 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J014991 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 250.7 -0.2 -172 3.5 IKZF1 POLR2A NFIC SMAD5 ETS1 SIN3A IRF2 TAF9B HCFC1 ELF1 ENSG00000215237 FREM1 LOC389705 LOC105375980 lnc-SNAPC3-7 HSALNG0070132 CLCN3P1 lnc-TTC39B-4 TTC39B
GH09J015018 Enhancer 0.4 ENCODE 0.3 +25.1 25091 0.2 CREB1 FOS CTCF piR-39858-632 piR-31534-686 LOC389705 ENSG00000215237 lnc-SNAPC3-7 FREM1 lnc-TTC39B-4 CLCN3P1 TTC39B
GH09J015010 Enhancer 0.2 Ensembl 0.4 +17.8 17774 0.6 ENSG00000215237 piR-39858-632 lnc-SNAPC3-7 piR-31534-686 LOC389705 FREM1 lnc-TTC39B-4 CLCN3P1 TTC39B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC389705 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC389705 gene promoter:
  • E47
  • FOXJ2
  • FOXJ2 (long isoform)
  • Hand1
  • Meis-1
  • Meis-1a
  • Meis-1b
  • STAT1
  • STAT1alpha
  • TBP

Genomic Locations for LOC389705 Gene

Latest Assembly
chr9:14,993,327-15,019,724
(GRCh38/hg38)
Size:
26,398 bases
Orientation:
Plus strand

Previous Assembly
chr9:14,993,325-15,019,722
(GRCh37/hg19 by Entrez Gene)
Size:
26,398 bases
Orientation:
Plus strand

Genomic View for LOC389705 Gene

Genes around LOC389705 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC389705 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC389705 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC389705 Gene

Proteins for LOC389705 Gene

Post-translational modifications for LOC389705 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC389705 Gene

Domains & Families for LOC389705 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC389705 Gene

Function for LOC389705 Gene

Phenotypes for LOC389705 Gene

genes like me logo Genes that share phenotypes with LOC389705: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC389705 Gene

Localization for LOC389705 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC389705 Gene

Pathways & Interactions for LOC389705 Gene

PathCards logo

SuperPathways for LOC389705 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC389705 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC389705 Gene

Drugs & Compounds for LOC389705 Gene

No Compound Related Data Available

Transcripts for LOC389705 Gene

mRNA/cDNA for LOC389705 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC389705 Gene

No ASD Table

Relevant External Links for LOC389705 Gene

GeneLoc Exon Structure for
LOC389705

Expression for LOC389705 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC389705 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC389705

SOURCE GeneReport for Unigene cluster for LOC389705 Gene:

Hs.431257
genes like me logo Genes that share expression patterns with LOC389705: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC389705 Gene

Orthologs for LOC389705 Gene

No data available for Orthologs and Evolution for LOC389705 Gene

Paralogs for LOC389705 Gene

No data available for Paralogs for LOC389705 Gene

Variants for LOC389705 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC389705 Gene

Variant ID Type Subtype PubMed ID
esv2761503 CNV loss 21179565
esv3891619 CNV loss 25118596
nsv613637 CNV gain 21841781
nsv613647 CNV loss 21841781
nsv831519 CNV loss 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Variation tolerance and Additional Variant Information for LOC389705 Gene

Disorders for LOC389705 Gene

No disorders were found for LOC389705 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC389705 Gene

Publications for LOC389705 Gene

No publications were found for LOC389705 Gene.

No data available for Mastermind for LOC389705 Gene

Products for LOC389705 Gene

Sources for LOC389705 Gene