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Aliases for LOC389705 Gene

Aliases for LOC389705 Gene

  • Histone PARylation Factor 1 Pseudogene 3
  • AL592293.1 5

External Ids for LOC389705 Gene

Previous GeneCards Identifiers for LOC389705 Gene

  • GC09U900349
  • GC09P014987

Summaries for LOC389705 Gene

GeneCards Summary for LOC389705 Gene

LOC389705 (Histone PARylation Factor 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC389705 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC389705 Gene

Genomics for LOC389705 Gene

GeneHancer (GH) Regulatory Elements for LOC389705 Gene

Promoters and enhancers for LOC389705 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I014991 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE 568.4 +0.1 138 2.9 HDAC1 ATF1 SIN3A ZBTB40 ETS1 E2F8 EGR1 ATF7 ZBTB11 CEBPB LOC389705 LOC105375980 PSIP1P1 CLCN3P1
GH09I015551 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.4 +559.9 559895 2.8 HDGF PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF207 ZNF143 CCDC171 LOC389705 PSIP1 ENSG00000272871 GC09M015564
GH09I014906 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.4 -84.6 -84561 5.4 PKNOX1 FOXA2 ZFP64 ARID4B FEZF1 DMAP1 ZNF48 TCF12 GLIS2 ZSCAN16 FREM1 RNU6-1260P LOC389705
GH09I014961 Enhancer 0.9 ENCODE 18.9 -31.4 -31435 1.4 ELF3 PKNOX1 ATF1 FOXA2 ARID4B DMAP1 ZSCAN9 RARA ETS1 CREM LOC389705 GC09M014955 GC09M014956 GC09M014957 PIR32025 LOC105375980
GH09I014956 Enhancer 0.6 FANTOM5 ENCODE 22.9 -35.9 -35931 2.2 RCOR1 NR2F2 CHD2 LOC389705 GC09M014955 GC09M014956 GC09M014957 PIR32025 LOC105375980
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC389705 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC389705 gene promoter:

Genomic Locations for LOC389705 Gene

Genomic Locations for LOC389705 Gene
chr9:14,993,312-15,019,729
(GRCh38/hg38)
Size:
26,418 bases
Orientation:
Plus strand
chr9:14,993,310-15,019,727
(GRCh37/hg19)

Genomic View for LOC389705 Gene

Genes around LOC389705 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC389705 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC389705 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC389705 Gene

Proteins for LOC389705 Gene

Post-translational modifications for LOC389705 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC389705 Gene

Domains & Families for LOC389705 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC389705 Gene

Function for LOC389705 Gene

Phenotypes for LOC389705 Gene

GenomeRNAi human phenotypes for LOC389705:
genes like me logo Genes that share phenotypes with LOC389705: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC389705 Gene

Localization for LOC389705 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC389705 Gene

Pathways & Interactions for LOC389705 Gene

SuperPathways for LOC389705 Gene

No Data Available

Interacting Proteins for LOC389705 Gene

Gene Ontology (GO) - Biological Process for LOC389705 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC389705 Gene

Drugs & Compounds for LOC389705 Gene

No Compound Related Data Available

Transcripts for LOC389705 Gene

mRNA/cDNA for LOC389705 Gene

(1) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC389705 Gene

Chromosome 4 open reading frame 27 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC389705 Gene

No ASD Table

Relevant External Links for LOC389705 Gene

GeneLoc Exon Structure for
LOC389705

Expression for LOC389705 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC389705 Gene

SOURCE GeneReport for Unigene cluster for LOC389705 Gene:

Hs.431257
genes like me logo Genes that share expression patterns with LOC389705: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC389705 Gene

Orthologs for LOC389705 Gene

Evolution for LOC389705 Gene

ENSEMBL:
Gene Tree for LOC389705 (if available)
TreeFam:
Gene Tree for LOC389705 (if available)

No data available for Orthologs for LOC389705 Gene

Paralogs for LOC389705 Gene

No data available for Paralogs for LOC389705 Gene

Variants for LOC389705 Gene

Sequence variations from dbSNP and Humsavar for LOC389705 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000093826 -- 15,018,516(+) T/C intron_variant
rs1000094500 -- 15,010,657(+) T/C intron_variant
rs1000189129 -- 15,002,174(+) T/G intron_variant
rs1000299336 -- 14,996,696(+) G/A intron_variant
rs1000317648 -- 15,008,116(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC389705 Gene

Variant ID Type Subtype PubMed ID
esv2761503 CNV loss 21179565
esv3891619 CNV loss 25118596
nsv613637 CNV gain 21841781
nsv613647 CNV loss 21841781
nsv831519 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC389705 Gene

Disorders for LOC389705 Gene

Additional Disease Information for LOC389705

No disorders were found for LOC389705 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC389705 Gene

Publications for LOC389705 Gene

No publications were found for LOC389705 Gene.

Products for LOC389705 Gene

Sources for LOC389705 Gene

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