Aliases for LOC389641 Gene

Subcategory (RNA class) for LOC389641 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC389641 Gene

  • Uncharacterized LOC389641 3
  • NONHSAG049754.2 91
  • HSALNG0063968 164
  • Lnc-CHMP7-1 165

External Ids for LOC389641 Gene

Previous GeneCards Identifiers for LOC389641 Gene

  • GC08U900297
  • GC08P023104
  • GC08P023138
  • GC08P023081
  • GC08P023224

Summaries for LOC389641 Gene

GeneCards Summary for LOC389641 Gene

LOC389641 (Uncharacterized LOC389641) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC389641 include Pancreatic Ductal Adenocarcinoma.

Additional gene information for LOC389641 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC389641 Gene

Genomics for LOC389641 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC389641 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J023223 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 600.7 +0.5 489 4.6 HNRNPL IKZF1 BACH1 LARP7 ZNF143 MTA2 RBFOX2 MTA1 NR2C1 IKZF2 TNFRSF10A ENSG00000246582 LOC389641 CHMP7 CCAR2 ENSG00000250714
GH08J023230 Promoter/Enhancer 0.9 Ensembl ENCODE 0.4 +5.8 5768 1.2 IRF2 CEBPB RUNX3 YY1 MNT FOSL1 JUNB ATF3 TBX21 MAX ENSG00000250714 piR-57460-629 TNFRSF10A ENSG00000246582 LOC389641 CHMP7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC389641 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC389641 Gene

Genomic Locations for LOC389641 Gene
chr8:23,225,201-23,231,085
(GRCh38/hg38)
Size:
5,885 bases
Orientation:
Plus strand
chr8:23,081,984-23,088,439
(GRCh37/hg19)
Size:
6,456 bases
Orientation:
Plus strand

Genomic View for LOC389641 Gene

Genes around LOC389641 on UCSC Golden Path with GeneCards custom track
LOC389641 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC389641 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC389641 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC389641 Gene

Proteins for LOC389641 Gene

Post-translational modifications for LOC389641 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC389641 Gene

Domains & Families for LOC389641 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC389641 Gene

Function for LOC389641 Gene

Phenotypes From GWAS Catalog for LOC389641 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC389641 Gene

Localization for LOC389641 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC389641 Gene

Pathways & Interactions for LOC389641 Gene

PathCards logo

SuperPathways for LOC389641 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC389641 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC389641 Gene

Drugs & Compounds for LOC389641 Gene

No Compound Related Data Available

Transcripts for LOC389641 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC389641 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E1EA_9606 lncRNA 1970 4

RefSeq: NR_033928,

Ensembl: ENST00000500853 (view in UCSC) ,

LNCipedia: lnc-CHMP7-1:2,

NONCODE: NONHSAT125546.2,

URS00008B3E39_9606 lncRNA 1539 3

LncBook: HSALNT0134157,

LNCipedia: lnc-CHMP7-1:5,

NONCODE: NONHSAT125549.2,

URS0000D5C138_9606 lncRNA 1973 2

LncBook: HSALNT0134153,

LNCipedia: lnc-CHMP7-1:11,

URS0000D5E3BC_9606 lncRNA 1666 2

LncBook: HSALNT0134151,

LNCipedia: lnc-CHMP7-1:6,

URS00008BDC99_9606 lncRNA 1091 2

LNCipedia: lnc-CHMP7-1:4,

NONCODE: NONHSAT125548.2,

LOC389641 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC389641 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC389641 Gene

No ASD Table

Relevant External Links for LOC389641 Gene

GeneLoc Exon Structure for
LOC389641

Expression for LOC389641 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC389641 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC389641

SOURCE GeneReport for Unigene cluster for LOC389641 Gene:

Hs.591835
genes like me logo Genes that share expression patterns with LOC389641: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC389641 Gene

Orthologs for LOC389641 Gene

No data available for Orthologs and Evolution for LOC389641 Gene

Paralogs for LOC389641 Gene

No data available for Paralogs for LOC389641 Gene

Variants for LOC389641 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC389641 Gene

SNP ID Clinical significance and condition Chr 08 pos Variation AA Info Type
rs13278062 Not Provided: not provided 23,225,458(+) G/T NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for LOC389641 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC389641 Gene

Variant ID Type Subtype PubMed ID
esv2759604 CNV loss 17122850
nsv1017570 CNV gain 25217958
nsv1027718 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC389641 Gene

Disorders for LOC389641 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC389641 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
pancreatic ductal adenocarcinoma
  • ductal adenocarcinoma of the pancreas
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC389641

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
genes like me logo Genes that share disorders with LOC389641: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC389641 Gene

Publications for LOC389641 Gene

  1. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood HD … Lan Q (Occupational and environmental medicine 2009) 3 41
  2. Long non-coding RNA LOC389641 promotes progression of pancreatic ductal adenocarcinoma and increases cell invasion by regulating E-cadherin in a TNFRSF10A-related manner. (PMID: 26708505) Zheng S … Chen R (Cancer letters 2016) 3
  3. Seven new loci associated with age-related macular degeneration. (PMID: 23455636) Fritsche LG … AMD Gene Consortium (Nature genetics 2013) 3
  4. Genome-wide association study identifies two susceptibility loci for exudative age-related macular degeneration in the Japanese population. (PMID: 21909106) Arakawa S … Kubo M (Nature genetics 2011) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC389641 Gene

Products for LOC389641 Gene

Sources for LOC389641 Gene