Aliases for LOC388955 Gene

Aliases for LOC388955 Gene

  • PRELI Domain-Containing Protein 1, Mitochondrial Pseudogene 3
  • PRELI Domain Containing 1 Pseudogene 3
  • PX19 Protein Pseudogene 3

External Ids for LOC388955 Gene

Previous GeneCards Identifiers for LOC388955 Gene

  • GC02U900456
  • GC02M063824
  • GC02M063760
  • GC02M063703
  • GC02M063850

Summaries for LOC388955 Gene

GeneCards Summary for LOC388955 Gene

LOC388955 (PRELI Domain-Containing Protein 1, Mitochondrial Pseudogene) is a Pseudogene.

Additional gene information for LOC388955 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC388955 Gene

Genomics for LOC388955 Gene

GeneHancer (GH) Regulatory Elements for LOC388955 Gene

Promoters and enhancers for LOC388955 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J063622 Promoter 0.3 Ensembl 500.7 +0.5 526 1 ENSG00000228305 LOC388955 piR-40609-001 piR-44373-003 piR-32930-001 piR-53440-003 MDH1 ENSG00000225889 lnc-VPS54-6 WDPCP
GH02J063639 Enhancer 0.4 Ensembl ENCODE 0.4 -16.6 -16574 0.8 CHD7 lnc-VPS54-5 LOC388955 lnc-VPS54-6 WDPCP lnc-WDPCP-3
GH02J063643 Enhancer 0.2 Ensembl 0.4 -20.7 -20674 0.6 RPS4XP5 lnc-VPS54-5 MDH1 LOC388955 lnc-VPS54-6 WDPCP lnc-WDPCP-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC388955 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC388955 gene promoter:
  • COUP
  • COUP-TF
  • COUP-TF1
  • FOXD3
  • Gfi-1
  • HNF-4alpha1
  • HNF-4alpha2
  • HSF1 (long)
  • HSF1short
  • p53

Genomic Locations for LOC388955 Gene

Genomic Locations for LOC388955 Gene
chr2:63,622,084-63,623,027
(GRCh38/hg38)
Size:
944 bases
Orientation:
Minus strand
chr2:63,849,218-63,850,117
(GRCh37/hg19)
Size:
900 bases
Orientation:
Minus strand

Genomic View for LOC388955 Gene

Genes around LOC388955 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC388955 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC388955 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC388955 Gene

Proteins for LOC388955 Gene

Post-translational modifications for LOC388955 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC388955 Gene

Domains & Families for LOC388955 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC388955 Gene

Function for LOC388955 Gene

Phenotypes From GWAS Catalog for LOC388955 Gene

Phenotypes for LOC388955 Gene

genes like me logo Genes that share phenotypes with LOC388955: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC388955 Gene

Localization for LOC388955 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC388955 Gene

Pathways & Interactions for LOC388955 Gene

PathCards logo

SuperPathways for LOC388955 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC388955 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC388955 Gene

Drugs & Compounds for LOC388955 Gene

No Compound Related Data Available

Transcripts for LOC388955 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC388955 Gene

No ASD Table

Relevant External Links for LOC388955 Gene

GeneLoc Exon Structure for
LOC388955

No data available for mRNA/cDNA for LOC388955 Gene

Expression for LOC388955 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC388955 Gene

mRNA differential expression in normal tissues according to GTEx for LOC388955 Gene

This gene is overexpressed in Whole Blood (x5.3).
genes like me logo Genes that share expression patterns with LOC388955: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC388955 Gene

Orthologs for LOC388955 Gene

No data available for Orthologs and Evolution for LOC388955 Gene

Paralogs for LOC388955 Gene

No data available for Paralogs for LOC388955 Gene

Variants for LOC388955 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC388955 Gene

Disorders for LOC388955 Gene

No disorders were found for LOC388955 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC388955 Gene

Publications for LOC388955 Gene

No publications were found for LOC388955 Gene.

No data available for Mastermind for LOC388955 Gene

Products for LOC388955 Gene

Sources for LOC388955 Gene