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Aliases for LOC388813 Gene

Aliases for LOC388813 Gene

  • Uncharacterized Protein ENSP00000383407-Like 3
  • AF130351.1 5

External Ids for LOC388813 Gene

Previous GeneCards Identifiers for LOC388813 Gene

  • GC21U900129
  • GC21M014886
  • GC21M015954

Summaries for LOC388813 Gene

GeneCards Summary for LOC388813 Gene

LOC388813 (Uncharacterized Protein ENSP00000383407-Like) is a Protein Coding gene.

Additional gene information for LOC388813 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC388813 Gene

Genomics for LOC388813 Gene

GeneHancer (GH) Regulatory Elements for LOC388813 Gene

Promoters and enhancers for LOC388813 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I014752 Enhancer 1.2 ENCODE dbSUPER 16.7 -95.1 -95085 2.1 PKNOX1 ATF1 ARNT NCOA2 ZNF280A TCF12 POLR2B ZNF766 GATA2 ATF7 ENSG00000232884 LOC388813 SAMSN1 SAMSN1-AS1 POLR2CP1
GH21I014683 Enhancer 1.3 FANTOM5 Ensembl ENCODE 12.5 -27.1 -27133 5.5 PKNOX1 SMAD1 BATF IRF4 ATF7 ETV6 IKZF2 RUNX3 CBFB JUNB SAMSN1 LOC388813 SAMSN1-AS1 NRIP1 LOC105372738 GC21P014744
GH21I014480 Enhancer 1.1 FANTOM5 Ensembl ENCODE 11.1 +176.7 176720 3 L3MBTL2 ZBED1 ATF2 NFIC POLR2A IKZF1 NFATC1 ETV6 ZBTB33 RUNX3 SAMSN1 LOC388813 SAMSN1-AS1 HSPA13
GH21I014589 Enhancer 1.1 FANTOM5 Ensembl ENCODE 11 +68.7 68683 1.3 JUNB EBF1 ELF1 BATF ATF2 CHAMP1 NFATC1 ATF7 MLLT1 ETV6 LOC388813 SAMSN1 NRIP1 SAMSN1-AS1
GH21I014630 Enhancer 0.9 ENCODE 12.6 +28.1 28126 0.2 HDAC1 ATF1 PKNOX1 TAF9B ARNT BATF ZBTB40 NCOA2 CHAMP1 TCF12 LOC388813 SAMSN1 SAMSN1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC388813 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC388813 gene promoter:

Genomic Locations for LOC388813 Gene

Genomic Locations for LOC388813 Gene
chr21:14,591,392-14,658,821
(GRCh38/hg38)
Size:
67,430 bases
Orientation:
Minus strand
chr21:15,964,251-16,031,142
(GRCh37/hg19)

Genomic View for LOC388813 Gene

Genes around LOC388813 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC388813 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC388813 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC388813 Gene

Proteins for LOC388813 Gene

  • Protein details for LOC388813 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WSY0
    Recommended name:
    HCG1818297
    Protein Accession:
    A0A087WSY0

    Protein attributes for LOC388813 Gene

    Size:
    165 amino acids
    Molecular mass:
    19293 Da
    Quaternary structure:
    No Data Available
  • Protein details for LOC388813 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H7C1N6
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    H7C1N6

    Protein attributes for LOC388813 Gene

    Size:
    152 amino acids
    Molecular mass:
    17765 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC388813 Gene

Post-translational modifications for LOC388813 Gene

No Post-translational modifications

Other Protein References for LOC388813 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LOC388813 Gene

Domains & Families for LOC388813 Gene

Protein Domains for LOC388813 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC388813: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC388813 Gene

Function for LOC388813 Gene

Phenotypes From GWAS Catalog for LOC388813 Gene

Phenotypes for LOC388813 Gene

GenomeRNAi human phenotypes for LOC388813:
genes like me logo Genes that share phenotypes with LOC388813: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC388813 Gene

Localization for LOC388813 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC388813 Gene

Pathways & Interactions for LOC388813 Gene

SuperPathways for LOC388813 Gene

No Data Available

Interacting Proteins for LOC388813 Gene

Gene Ontology (GO) - Biological Process for LOC388813 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC388813 Gene

Drugs & Compounds for LOC388813 Gene

No Compound Related Data Available

Transcripts for LOC388813 Gene

mRNA/cDNA for LOC388813 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(9) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC388813 Gene

Uncharacterized protein ENSP00000383407-like:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC388813 Gene

No ASD Table

Relevant External Links for LOC388813 Gene

GeneLoc Exon Structure for
LOC388813

Expression for LOC388813 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC388813 Gene

mRNA differential expression in normal tissues according to GTEx for LOC388813 Gene

This gene is overexpressed in Pituitary (x7.6).

SOURCE GeneReport for Unigene cluster for LOC388813 Gene:

Hs.334177
genes like me logo Genes that share expression patterns with LOC388813: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC388813 Gene

Orthologs for LOC388813 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LOC388813 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC473916 33
  • 98.74 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 2 (a)
OneToOne
Species where no ortholog for LOC388813 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC388813 Gene

ENSEMBL:
Gene Tree for LOC388813 (if available)
TreeFam:
Gene Tree for LOC388813 (if available)

Paralogs for LOC388813 Gene

No data available for Paralogs for LOC388813 Gene

Variants for LOC388813 Gene

Sequence variations from dbSNP and Humsavar for LOC388813 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000004130 -- 14,602,796(-) A/G intron_variant
rs1000107926 -- 14,631,206(-) G/T intron_variant
rs1000120253 -- 14,625,888(-) G/A intron_variant
rs1000135821 -- 14,631,448(-) /T intron_variant
rs1000165207 -- 14,591,565(-) T/C 3_prime_UTR_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC388813 Gene

Variant ID Type Subtype PubMed ID
esv3424583 CNV insertion 20981092
esv3434072 CNV duplication 20981092
esv3646433 CNV gain 21293372
esv3646434 CNV gain 21293372
nsv3457 CNV deletion 18451855
nsv470879 CNV gain 18288195
nsv834045 CNV loss 17160897
nsv834046 CNV gain+loss 17160897
esv3306662 CNV mobile element insertion 20981092
esv2723181 CNV deletion 23290073

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC388813 Gene

Disorders for LOC388813 Gene

Additional Disease Information for LOC388813

No disorders were found for LOC388813 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC388813 Gene

Publications for LOC388813 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58
  3. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 58

Products for LOC388813 Gene

Sources for LOC388813 Gene

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