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Aliases for LOC388780 Gene

Aliases for LOC388780 Gene

  • Uncharacterized LOC388780 3
  • Uncharacterized Protein LOC388780 3
  • AL121899.1 5

External Ids for LOC388780 Gene

Previous GeneCards Identifiers for LOC388780 Gene

  • GC20U900122
  • GC20P002137
  • GC20P002135
  • GC20P002188

Summaries for LOC388780 Gene

GeneCards Summary for LOC388780 Gene

LOC388780 (Uncharacterized LOC388780) is a Protein Coding gene.

Additional gene information for LOC388780 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC388780 Gene

Genomics for LOC388780 Gene

GeneHancer (GH) Regulatory Elements for LOC388780 Gene

Promoters and enhancers for LOC388780 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J002206 Promoter/Enhancer 1.4 Ensembl ENCODE 658 +0.9 898 1.5 HDGF ARID4B SIN3A ZNF2 ZNF48 GLIS2 ELK1 ARID2 ZNF143 ZNF548 LOC388780 ZNF343 TGM3 NOP56 VPS16 SNRPB STK35 GC20P002217
GH20J002252 Enhancer 0.6 FANTOM5 Ensembl 9.4 +46.5 46536 1.2 CEBPB TGM3 LOC388780 SIRPA GC20P002217
GH20J002208 Enhancer 0.3 FANTOM5 8.6 +2.1 2110 0.1 TGM3 LOC388780 SIRPA GC20P002217
GH20J002255 Enhancer 0.4 FANTOM5 ENCODE 5.9 +49.8 49784 0.9 TGM3 SIRPA LOC388780 GC20P002217
GH20J002210 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.7 +4.7 4742 1.4 CTCF ATF1 YBX1 FEZF1 RAD21 ATF2 ZNF121 ZFP3 ZSCAN5C CREB1 TGM3 SIRPA LOC388780 GC20P002217
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC388780 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC388780 Gene

Genomic Locations for LOC388780 Gene
chr20:2,206,468-2,258,031
(GRCh38/hg38)
Size:
51,564 bases
Orientation:
Plus strand
chr20:2,187,863-2,193,797
(GRCh37/hg19)
Size:
5,935 bases
Orientation:
Plus strand

Genomic View for LOC388780 Gene

Genes around LOC388780 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC388780 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC388780 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC388780 Gene

Proteins for LOC388780 Gene

Post-translational modifications for LOC388780 Gene

No Post-translational modifications

Other Protein References for LOC388780 Gene

No data available for DME Specific Peptides for LOC388780 Gene

Domains & Families for LOC388780 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC388780 Gene

Function for LOC388780 Gene

Phenotypes From GWAS Catalog for LOC388780 Gene

genes like me logo Genes that share phenotypes with LOC388780: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC388780

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC388780 Gene

Localization for LOC388780 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC388780 Gene

Pathways & Interactions for LOC388780 Gene

SuperPathways for LOC388780 Gene

No Data Available

Interacting Proteins for LOC388780 Gene

Gene Ontology (GO) - Biological Process for LOC388780 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC388780 Gene

Drugs & Compounds for LOC388780 Gene

No Compound Related Data Available

Transcripts for LOC388780 Gene

mRNA/cDNA for LOC388780 Gene

(4) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC388780 Gene

Uncharacterized LOC388780:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC388780

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC388780 Gene

No ASD Table

Relevant External Links for LOC388780 Gene

GeneLoc Exon Structure for
LOC388780

Expression for LOC388780 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC388780 Gene

mRNA differential expression in normal tissues according to GTEx for LOC388780 Gene

This gene is overexpressed in Testis (x6.7) and Esophagus - Mucosa (x5.6).

SOURCE GeneReport for Unigene cluster for LOC388780 Gene:

Hs.132163
genes like me logo Genes that share expression patterns with LOC388780: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC388780 Gene

Orthologs for LOC388780 Gene

Evolution for LOC388780 Gene

ENSEMBL:
Gene Tree for LOC388780 (if available)
TreeFam:
Gene Tree for LOC388780 (if available)

No data available for Orthologs for LOC388780 Gene

Paralogs for LOC388780 Gene

No data available for Paralogs for LOC388780 Gene

Variants for LOC388780 Gene

Sequence variations from dbSNP and Humsavar for LOC388780 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000117793 -- 2,210,792(+) G/A intron_variant
rs1000206018 -- 2,218,663(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000375154 -- 2,224,735(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000483620 -- 2,217,597(+) A/T genic_downstream_transcript_variant, intron_variant
rs1000527990 -- 2,205,576(+) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC388780 Gene

Variant ID Type Subtype PubMed ID
esv2758778 CNV gain 17122850
esv3644998 CNV gain 21293372
nsv470535 CNV gain 18288195
nsv585262 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC388780 Gene

Disorders for LOC388780 Gene

Additional Disease Information for LOC388780

No disorders were found for LOC388780 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC388780 Gene

Publications for LOC388780 Gene

No publications were found for LOC388780 Gene.

Products for LOC388780 Gene

Sources for LOC388780 Gene

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