Aliases for LOC388282 Gene

Aliases for LOC388282 Gene

  • Uncharacterized LOC388282 3 5
  • Uncharacterized Protein LOC388282 3
  • CTD-2600O9.1 3
  • Lnc-KATNB1-8 168
  • AC092118.1 5

External Ids for LOC388282 Gene

Previous GeneCards Identifiers for LOC388282 Gene

  • GC16U900321
  • GC16P057621
  • GC16P056402

Summaries for LOC388282 Gene

GeneCards Summary for LOC388282 Gene

LOC388282 (Uncharacterized LOC388282) is a Protein Coding gene.

Additional gene information for LOC388282 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC388282 Gene

Genomics for LOC388282 Gene

GeneHancer (GH) Regulatory Elements for LOC388282 Gene

Promoters and enhancers for LOC388282 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J057795 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.9 1899 10 EP300 FOXK2 CTCF TCF12 NRF1 POLR2G JUND FOS ZIC2 REST KIFC3 LOC388282 CNOT1 RSPRY1 NLRC5 SETD6 lnc-CNGB1-2
GH16J057846 Enhancer 1.1 FANTOM5 Ensembl ENCODE 18 +48.0 48026 3.2 TEAD4 ZIC2 TCF7 ZNF623 ZBTB7A HDAC2 CEBPB ZBTB17 NR3C1 YY1 CNGB1 LOC388282 ADGRG1 piR-60051-036 piR-38580-103 KIFC3
GH16J057891 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 11.5 +95.4 95437 3.7 EP300 FOXK2 TCF12 POLR2G NCOR1 KDM6A TCF7 ZNF623 FOXA1 ZBTB25 lnc-TEPP-2 RSPRY1 ADGRG3 CSNK2A2 SETD6 KIFC3 LOC388282 CNGB1 ADGRG1 CFAP20
GH16J057756 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.6 -39.5 -39533 5.1 CTCF POLR2G SP1 ZIC2 REST ZBTB25 MYC RAD21 CTBP1 TRIM22 ENSG00000276166 KIFC3 LOC388282 lnc-CNGB1-3 KATNB1 lnc-KIFC3-2
GH16J057829 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.4 +32.5 32480 2.5 NCOR1 ZIC2 TCF7 TGIF2 SKI RBM25 NR2F2 KDM1A SAP130 CEBPB AB330789-017 RNU6-20P RF00026-399 LOC388282 KIFC3 CNGB1 piR-60051-036
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC388282 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC388282

Genomic Locations for LOC388282 Gene

Genomic Locations for LOC388282 Gene
chr16:57,798,186-57,816,946
(GRCh38/hg38)
Size:
18,761 bases
Orientation:
Plus strand
chr16:57,832,098-57,850,850
(GRCh37/hg19)
Size:
18,753 bases
Orientation:
Plus strand

Genomic View for LOC388282 Gene

Genes around LOC388282 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC388282 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC388282 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC388282 Gene

Proteins for LOC388282 Gene

Post-translational modifications for LOC388282 Gene

No Post-translational modifications

Other Protein References for LOC388282 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC388282 Gene

Domains & Families for LOC388282 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC388282 Gene

Function for LOC388282 Gene

Phenotypes for LOC388282 Gene

genes like me logo Genes that share phenotypes with LOC388282: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC388282 Gene

Localization for LOC388282 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC388282 Gene

Pathways & Interactions for LOC388282 Gene

PathCards logo

SuperPathways for LOC388282 Gene

No Data Available

Interacting Proteins for LOC388282 Gene

;

Gene Ontology (GO) - Biological Process for LOC388282 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC388282 Gene

Drugs & Compounds for LOC388282 Gene

No Compound Related Data Available

Transcripts for LOC388282 Gene

mRNA/cDNA for LOC388282 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 RNACentral transcripts :
1 LNCipedia transcripts :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC388282

Alternative Splicing Database (ASD) splice patterns (SP) for LOC388282 Gene

No ASD Table

Relevant External Links for LOC388282 Gene

GeneLoc Exon Structure for
LOC388282

Expression for LOC388282 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC388282 Gene

mRNA differential expression in normal tissues according to GTEx for LOC388282 Gene

This gene is overexpressed in Pancreas (x15.8) and Kidney - Cortex (x6.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC388282

SOURCE GeneReport for Unigene cluster for LOC388282 Gene:

Hs.434720
genes like me logo Genes that share expression patterns with LOC388282: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC388282 Gene

Orthologs for LOC388282 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC388282 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC738088 30
  • 98.65 (n)
-- 31
  • 98 (a)
OneToOne
Species where no ortholog for LOC388282 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC388282 Gene

ENSEMBL:
Gene Tree for LOC388282 (if available)
TreeFam:
Gene Tree for LOC388282 (if available)

Paralogs for LOC388282 Gene

No data available for Paralogs for LOC388282 Gene

Variants for LOC388282 Gene

Additional dbSNP identifiers (rs#s) for LOC388282 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC388282 Gene

Variant ID Type Subtype PubMed ID
nsv509622 CNV insertion 20534489
nsv525464 CNV gain 19592680

Variation tolerance for LOC388282 Gene

Gene Damage Index Score: 5.41; 71.25% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional Variant Information for LOC388282 Gene

Disorders for LOC388282 Gene

No disorders were found for LOC388282 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC388282 Gene

Publications for LOC388282 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC388282 Gene

Products for LOC388282 Gene

Sources for LOC388282 Gene