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Aliases for LOC388282 Gene

Aliases for LOC388282 Gene

  • Uncharacterized LOC388282 3
  • Uncharacterized Protein LOC388282 3
  • CTD-2600O9.1 3
  • AC092118.1 5

External Ids for LOC388282 Gene

Previous GeneCards Identifiers for LOC388282 Gene

  • GC16U900321
  • GC16P057621
  • GC16P056402

Summaries for LOC388282 Gene

GeneCards Summary for LOC388282 Gene

LOC388282 (Uncharacterized LOC388282) is a Protein Coding gene.

Additional gene information for LOC388282 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC388282 Gene

Genomics for LOC388282 Gene

GeneHancer (GH) Regulatory Elements for LOC388282 Gene

Promoters and enhancers for LOC388282 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J057795 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 +1.9 1899 10 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 KIFC3 LOC388282 CNOT1 RSPRY1 SETD6 GC16M057830 RNU6-20P GC16P057760
GH16J057891 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +95.4 95437 3.7 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 SP5 RSPRY1 ADGRG3 CSNK2A2 SETD6 KIFC3 LOC388282 CNGB1 ADGRG1 CNOT1 CFAP20
GH16J057829 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.3 +32.5 32522 2.4 ELF3 ARID4B DMAP1 THRB ZNF48 RAD21 RARA YY1 ZNF121 EGR1 GC16M057830 RNU6-20P LOC388282 KIFC3 CNGB1 GC16M057828
GH16J057889 Enhancer 1.3 FANTOM5 Ensembl ENCODE 11.5 +92.1 92124 1.4 BCOR MEIS2 PKNOX1 SAP130 MAX ZMYM3 CEBPG YY1 EGR1 NFE2 GC16P057890 KIFC3 LOC388282 CNGB1 ADGRG3 ADGRG1 CFAP20
GH16J057756 Enhancer 1.1 ENCODE dbSUPER 11.6 -41.1 -41114 1.9 HDGF ARID4B SIN3A ZNF48 GLIS2 ARID2 ZNF143 ATF7 KLF13 DEK KIFC3 LOC388282 ENSG00000276166 GC16M057746 KATNB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC388282 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC388282 Gene

Genomic Locations for LOC388282 Gene
chr16:57,798,186-57,816,946
(GRCh38/hg38)
Size:
18,761 bases
Orientation:
Plus strand
chr16:57,832,098-57,850,850
(GRCh37/hg19)

Genomic View for LOC388282 Gene

Genes around LOC388282 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC388282 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC388282 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC388282 Gene

Proteins for LOC388282 Gene

Post-translational modifications for LOC388282 Gene

No Post-translational modifications

Other Protein References for LOC388282 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC388282 Gene

Domains & Families for LOC388282 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC388282 Gene

Function for LOC388282 Gene

Phenotypes for LOC388282 Gene

genes like me logo Genes that share phenotypes with LOC388282: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC388282

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC388282 Gene

Localization for LOC388282 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC388282 Gene

Pathways & Interactions for LOC388282 Gene

SuperPathways for LOC388282 Gene

No Data Available

Interacting Proteins for LOC388282 Gene

Gene Ontology (GO) - Biological Process for LOC388282 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC388282 Gene

Drugs & Compounds for LOC388282 Gene

No Compound Related Data Available

Transcripts for LOC388282 Gene

mRNA/cDNA for LOC388282 Gene

(9) Selected AceView cDNA sequences:
(5) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Unigene Clusters for LOC388282 Gene

Uncharacterized LOC388282:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC388282

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC388282 Gene

No ASD Table

Relevant External Links for LOC388282 Gene

GeneLoc Exon Structure for
LOC388282

Expression for LOC388282 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC388282 Gene

mRNA differential expression in normal tissues according to GTEx for LOC388282 Gene

This gene is overexpressed in Pancreas (x15.8) and Kidney - Cortex (x6.1).

SOURCE GeneReport for Unigene cluster for LOC388282 Gene:

Hs.434720
genes like me logo Genes that share expression patterns with LOC388282: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC388282 Gene

Orthologs for LOC388282 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC388282 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC738088 33
  • 98.65 (n)
-- 34
  • 98 (a)
OneToOne
Species where no ortholog for LOC388282 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC388282 Gene

ENSEMBL:
Gene Tree for LOC388282 (if available)
TreeFam:
Gene Tree for LOC388282 (if available)

Paralogs for LOC388282 Gene

No data available for Paralogs for LOC388282 Gene

Variants for LOC388282 Gene

Sequence variations from dbSNP and Humsavar for LOC388282 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000060520 -- 57,815,296(+) C/A/G/T intron_variant
rs1000772497 -- 57,811,399(+) A/G intron_variant
rs1001469704 -- 57,816,640(+) G/C 3_prime_UTR_variant
rs1001965000 -- 57,810,539(+) G/A 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs1002031881 -- 57,810,799(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC388282 Gene

Variant ID Type Subtype PubMed ID
nsv509622 CNV insertion 20534489
nsv525464 CNV gain 19592680

Variation tolerance for LOC388282 Gene

Gene Damage Index Score: 5.41; 71.25% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Additional Variant Information for LOC388282 Gene

Disorders for LOC388282 Gene

Additional Disease Information for LOC388282

No disorders were found for LOC388282 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC388282 Gene

Publications for LOC388282 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC388282 Gene

Sources for LOC388282 Gene

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