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Aliases for LOC374443 Gene

Aliases for LOC374443 Gene

  • C-Type Lectin Domain Family 2 Member D Pseudogene 3
  • CLR Pseudogene 3

External Ids for LOC374443 Gene

Previous GeneCards Identifiers for LOC374443 Gene

  • GC12U900065
  • GC12P009677
  • GC12P009691
  • GC12P009800
  • GC12P009788
  • GC12P009621
  • GC12P009686
  • GC12P009688

Summaries for LOC374443 Gene

GeneCards Summary for LOC374443 Gene

LOC374443 (C-Type Lectin Domain Family 2 Member D Pseudogene) is a Pseudogene.

Additional gene information for LOC374443 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC374443 Gene

Genomics for LOC374443 Gene

GeneHancer (GH) Regulatory Elements for LOC374443 Gene

Promoters and enhancers for LOC374443 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J009614 Enhancer 0.9 FANTOM5 Ensembl ENCODE 650.7 -0.8 -776 3.3 PKNOX1 RUNX3 MAFK SPI1 LOC374443 CLEC2D KLRB1 KLRF1 ENSG00000214776 ENSG00000257027 CD69 CLECL1 ENSG00000256594 CLEC2B
GH12J009646 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 +34.4 34449 10 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 IRF4 SLC30A9 ZNF207 ZNF143 CLEC2D LOC105369728 ENSG00000256594 M6PR LOC642846 EIF2S3B LINC00612 DDX12P KLRB1 CLECL1
GH12J009636 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +19.0 18955 0.5 ATF7 ATF2 CLEC12A KLRB1 CLECL1 CLEC7A CLEC2B CD69 GOT2P3 GC12M012144 RNU6-700P LOC374443
GH12J009634 Enhancer 0.8 ENCODE dbSUPER 0.4 +17.1 17096 0.2 CTCF ZNF654 TRIM22 REST RAD21 ZNF143 SMC3 BCLAF1 MIXL1 CLECL1 KLRB1 GOT2P3 GC12M012144 RNU6-700P LOC374443 ENSG00000284634
GH12J009635 Enhancer 0.6 dbSUPER 0.4 +17.5 17494 0.6 CTCF ZNF654 TEAD4 TRIM22 CBFA2T3 REST RAD21 FOXA1 GATA3 ZNF143 CLECL1 KLRB1 GOT2P3 GC12M012144 RNU6-700P LOC374443 ENSG00000284634
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC374443 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC374443 gene promoter:

Genomic Locations for LOC374443 Gene

Genomic Locations for LOC374443 Gene
chr12:9,617,284-9,658,415
(GRCh38/hg38)
Size:
41,132 bases
Orientation:
Plus strand
chr12:9,787,188-9,811,008
(GRCh37/hg19)

Genomic View for LOC374443 Gene

Genes around LOC374443 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC374443 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC374443 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC374443 Gene

Proteins for LOC374443 Gene

Post-translational modifications for LOC374443 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC374443 Gene

Domains & Families for LOC374443 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC374443 Gene

Function for LOC374443 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC374443 Gene

Localization for LOC374443 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC374443 Gene

Pathways & Interactions for LOC374443 Gene

SuperPathways for LOC374443 Gene

No Data Available

Interacting Proteins for LOC374443 Gene

Gene Ontology (GO) - Biological Process for LOC374443 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC374443 Gene

Drugs & Compounds for LOC374443 Gene

No Compound Related Data Available

Transcripts for LOC374443 Gene

mRNA/cDNA for LOC374443 Gene

(11) Additional mRNA sequences :

Unigene Clusters for LOC374443 Gene

C-type lectin domain family 2, member D pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC374443 Gene

No ASD Table

Relevant External Links for LOC374443 Gene

GeneLoc Exon Structure for
LOC374443

Expression for LOC374443 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC374443 Gene

mRNA differential expression in normal tissues according to GTEx for LOC374443 Gene

This gene is overexpressed in Whole Blood (x6.1).

SOURCE GeneReport for Unigene cluster for LOC374443 Gene:

Hs.659158
genes like me logo Genes that share expression patterns with LOC374443: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC374443 Gene

Orthologs for LOC374443 Gene

No data available for Orthologs and Evolution for LOC374443 Gene

Paralogs for LOC374443 Gene

No data available for Paralogs for LOC374443 Gene

Variants for LOC374443 Gene

Sequence variations from dbSNP and Humsavar for LOC374443 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000121941 -- 9,657,738(+) T/A non_coding_transcript_variant
rs1000200222 -- 9,651,360(+) G/A intron_variant
rs1000239092 -- 9,627,702(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000312431 -- 9,639,152(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000379086 -- 9,620,155(+) G/A genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC374443 Gene

Variant ID Type Subtype PubMed ID
esv2759878 CNV gain+loss 17122850
nsv1051530 CNV gain 25217958
nsv428271 CNV gain 18775914
nsv603 CNV insertion 18451855
nsv983280 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC374443 Gene

Disorders for LOC374443 Gene

Additional Disease Information for LOC374443

No disorders were found for LOC374443 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC374443 Gene

Publications for LOC374443 Gene

  1. Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (PMID: 17567985) Tsuritani K … Suzuki Y (Genome research 2007) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC374443 Gene

Sources for LOC374443 Gene

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