Aliases for LOC344967 Gene

Aliases for LOC344967 Gene

  • Acyl-CoA Thioesterase 7 Pseudogene 3
  • Acyl-CoA Thioesterase 7 (ACOT7) Pseudogene 5
  • AC098591.2 5

External Ids for LOC344967 Gene

Previous GeneCards Identifiers for LOC344967 Gene

  • GC00U905799
  • GC04M039879
  • GC04M039939
  • GC04M039941
  • GC04M039867
  • GC04M039720

Summaries for LOC344967 Gene

GeneCards Summary for LOC344967 Gene

LOC344967 (Acyl-CoA Thioesterase 7 Pseudogene) is a Pseudogene. Among its related pathways are palmitate biosynthesis and Metabolism. Gene Ontology (GO) annotations related to this gene include carboxylic ester hydrolase activity and palmitoyl-CoA hydrolase activity.

Additional gene information for LOC344967 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC344967 Gene

Genomics for LOC344967 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC344967 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J040054 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.4 398 5.2 ARHGAP35 SP1 CREB1 GATAD2A TEAD4 PRDM10 ZNF629 REST TFE3 RFX1 N4BP2 LOC344967 PDS5A WDR19 ENSG00000250568 RHOH
GH04J040189 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.1 -142.8 -142779 22.4 SP1 CREB1 GATAD2A ZBTB33 PRDM10 REST ZNF629 ZNF512 RFX1 LEF1 RHOH N4BP2 PDS5A RFC1 RBM47 LOC344967 CHRNA9 ENSG00000250906 UGDH-AS1 ARL4AP2
GH04J040314 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 -259.2 -259174 4.6 RNF2 CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 RFX1 LEF1 ZNF692 LINC02265 UCHL1 LOC344967 N4BP2 RNU7-74P CHRNA9 RHOH
GH04J040298 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.1 -247.2 -247206 12.7 SP1 GATAD2A CTCF ATF7 IKZF1 KDM1A ZNF692 BACH1 JUND STAT3 N4BP2 RHOH CHRNA9 LOC344967 PDS5A LINC02265 HSALNG0034001
GH04J040333 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 10.4 -277.6 -277618 2.8 PRDM10 ZNF629 ZNF692 JUND PATZ1 ZNF561 SCRT2 ZBTB44 CEBPB SP1 CHRNA9 RNU7-74P LOC344967 N4BP2 LINC02265 RHOH
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC344967 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC344967 gene promoter:
  • Evi-1
  • FOXF2
  • FOXO1
  • FOXO1a
  • FOXO3
  • FOXO3a
  • FOXO3b
  • MRF-2

Genomic Locations for LOC344967 Gene

Genomic Locations for LOC344967 Gene
chr4:40,042,917-40,057,199
(GRCh38/hg38)
Size:
14,283 bases
Orientation:
Minus strand
chr4:40,044,537-40,058,819
(GRCh37/hg19)
Size:
14,283 bases
Orientation:
Minus strand

Genomic View for LOC344967 Gene

Genes around LOC344967 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC344967 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC344967 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC344967 Gene

Proteins for LOC344967 Gene

Post-translational modifications for LOC344967 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC344967 Gene

Domains & Families for LOC344967 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC344967 Gene

Function for LOC344967 Gene

Phenotypes From GWAS Catalog for LOC344967 Gene

Gene Ontology (GO) - Molecular Function for LOC344967 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000062 fatty-acyl-CoA binding IBA 21873635
GO:0016290 palmitoyl-CoA hydrolase activity IBA 21873635
GO:0036042 long-chain fatty acyl-CoA binding IBA 21873635
GO:0047617 acyl-CoA hydrolase activity IBA 21873635
GO:0052689 carboxylic ester hydrolase activity IEA --
genes like me logo Genes that share ontologies with LOC344967: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC344967 Gene

Localization for LOC344967 Gene

Gene Ontology (GO) - Cellular Components for LOC344967 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IBA 21873635
GO:0005829 cytosol IBA, TAS --
genes like me logo Genes that share ontologies with LOC344967: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LOC344967 Gene

Pathways & Interactions for LOC344967 Gene

genes like me logo Genes that share pathways with LOC344967: view

Pathways by source for LOC344967 Gene

Gene Ontology (GO) - Biological Process for LOC344967 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006631 fatty acid metabolic process IBA 21873635
GO:0006637 acyl-CoA metabolic process IBA, TAS --
GO:1900535 palmitic acid biosynthetic process IBA 21873635
genes like me logo Genes that share ontologies with LOC344967: view

No data available for Interacting Proteins and SIGNOR curated interactions for LOC344967 Gene

Drugs & Compounds for LOC344967 Gene

No Compound Related Data Available

Transcripts for LOC344967 Gene

mRNA/cDNA for LOC344967 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC344967 Gene

No ASD Table

Relevant External Links for LOC344967 Gene

GeneLoc Exon Structure for
LOC344967

Expression for LOC344967 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC344967 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC344967

SOURCE GeneReport for Unigene cluster for LOC344967 Gene:

Hs.534633
genes like me logo Genes that share expression patterns with LOC344967: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC344967 Gene

Orthologs for LOC344967 Gene

Evolution for LOC344967 Gene

ENSEMBL:
Gene Tree for LOC344967 (if available)
TreeFam:
Gene Tree for LOC344967 (if available)

No data available for Orthologs for LOC344967 Gene

Paralogs for LOC344967 Gene

No data available for Paralogs for LOC344967 Gene

Variants for LOC344967 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC344967 Gene

Variant ID Type Subtype PubMed ID
dgv5194n100 CNV gain 25217958
esv2422397 CNV duplication 17116639
esv3575688 CNV gain 25503493
nsv1010235 CNV gain 25217958
nsv1012387 CNV gain 25217958
nsv461341 CNV gain 19166990
nsv525389 CNV loss 19592680
nsv527656 CNV loss 19592680
nsv594032 CNV gain 21841781
nsv594033 CNV gain 21841781
nsv594043 CNV gain 21841781
nsv594044 CNV gain 21841781

Additional Variant Information for LOC344967 Gene

Human Gene Mutation Database (HGMD)
LOC344967

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for LOC344967 Gene

Disorders for LOC344967 Gene

No disorders were found for LOC344967 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC344967 Gene

Publications for LOC344967 Gene

  1. A functional variant in the transcriptional regulatory region of gene LOC344967 cosegregates with disease phenotype in familial nasopharyngeal carcinoma. (PMID: 16423998) Jiang RC … Zeng YX (Cancer research 2006) 3 23
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

No data available for Mastermind for LOC344967 Gene

Products for LOC344967 Gene

Sources for LOC344967 Gene