Aliases for LOC341056 Gene

Aliases for LOC341056 Gene

  • SUMO1 Activating Enzyme Subunit 1 Pseudogene 3

External Ids for LOC341056 Gene

Previous GeneCards Identifiers for LOC341056 Gene

  • GC00U907604
  • GC11P122901
  • GC11P122425
  • GC11P122392

Summaries for LOC341056 Gene

GeneCards Summary for LOC341056 Gene

LOC341056 (SUMO1 Activating Enzyme Subunit 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC341056 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC341056 Gene

Genomics for LOC341056 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC341056 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J123018 Enhancer 0.2 Ensembl 250.7 +1.1 1135 0.2 ENSG00000213184 LOC341056 lnc-JHY-2 BSX HSPA8
GH11J123016 Enhancer 0.2 Ensembl 250.7 -0.7 -665 0.2 ENSG00000213184 LOC341056 MF588795 BSX HSPA8
GH11J123010 Enhancer 0.4 Ensembl ENCODE 0.4 -6.0 -5954 1.7 ZNF133 MF588795 LOC341056 BSX HSPA8
GH11J123006 Enhancer 0.3 Ensembl 0.4 -10.8 -10765 1.2 CTCF MF588795 LOC341056 BSX HSPA8
GH11J123003 Enhancer 0.2 ENCODE 0.4 -13.9 -13918 0.2 MF588795 JHY CRTAM LOC341056 BSX HSPA8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC341056 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC341056 gene promoter:
  • Chx10
  • Evi-1
  • FOXO3
  • FOXO3a
  • FOXO3b
  • IRF-7A
  • Sox9

Genomic Locations for LOC341056 Gene

Latest Assembly
chr11:123,017,566-123,019,611
(GRCh38/hg38)
Size:
2,046 bases
Orientation:
Plus strand

Previous Assembly
chr11:122,888,274-122,890,319
(GRCh37/hg19 by Entrez Gene)
Size:
2,046 bases
Orientation:
Plus strand

Genomic View for LOC341056 Gene

Genes around LOC341056 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC341056 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC341056 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC341056 Gene

Proteins for LOC341056 Gene

Post-translational modifications for LOC341056 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC341056 Gene

Domains & Families for LOC341056 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC341056 Gene

Function for LOC341056 Gene

Phenotypes for LOC341056 Gene

GenomeRNAi human phenotypes for LOC341056:
genes like me logo Genes that share phenotypes with LOC341056: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC341056 Gene

Localization for LOC341056 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC341056 Gene

Pathways & Interactions for LOC341056 Gene

PathCards logo

SuperPathways for LOC341056 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC341056 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC341056 Gene

Drugs & Compounds for LOC341056 Gene

No Compound Related Data Available

Transcripts for LOC341056 Gene

mRNA/cDNA for LOC341056 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC341056 Gene

No ASD Table

Relevant External Links for LOC341056 Gene

GeneLoc Exon Structure for
LOC341056

Expression for LOC341056 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC341056 Gene

mRNA differential expression in normal tissues according to GTEx for LOC341056 Gene

This gene is overexpressed in Testis (x49.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC341056

SOURCE GeneReport for Unigene cluster for LOC341056 Gene:

Hs.620309
genes like me logo Genes that share expression patterns with LOC341056: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC341056 Gene

Orthologs for LOC341056 Gene

No data available for Orthologs and Evolution for LOC341056 Gene

Paralogs for LOC341056 Gene

No data available for Paralogs for LOC341056 Gene

Variants for LOC341056 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC341056 Gene

Variant ID Type Subtype PubMed ID
nsv1039284 CNV gain 25217958

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Variation tolerance and Additional Variant Information for LOC341056 Gene

Disorders for LOC341056 Gene

No disorders were found for LOC341056 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC341056 Gene

Publications for LOC341056 Gene

No publications were found for LOC341056 Gene.

No data available for Mastermind for LOC341056 Gene

Products for LOC341056 Gene

Sources for LOC341056 Gene