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Aliases for LOC340512 Gene

Subcategory (RNA class) for LOC340512 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC340512 Gene

  • Uncharacterized LOC340512 3
  • Novel Transcript 5
  • AL807761.4 5

External Ids for LOC340512 Gene

Previous GeneCards Identifiers for LOC340512 Gene

  • GC00U903117
  • GC09M103194
  • GC09U900313

Summaries for LOC340512 Gene

GeneCards Summary for LOC340512 Gene

LOC340512 (Uncharacterized LOC340512) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC340512 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC340512 Gene

Genomics for LOC340512 Gene

GeneHancer (GH) Regulatory Elements for LOC340512 Gene

Promoters and enhancers for LOC340512 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J107112 Enhancer 0.5 Ensembl 0.4 -9.9 -9913 0.2 IKZF1 IKZF2 BCL11A IRF4 ZNF24 ENSG00000223615 LOC340512
GH09J107067 Enhancer 0.7 Ensembl ENCODE 0.3 +34.7 34687 2.1 CTBP1 ZNF217 GATA3 FOXA1 LOC340512 RPL7AP44
GH09J107049 Enhancer 0.6 Ensembl ENCODE 0.2 +52.8 52787 2.4 CEBPG POLR2A ZNF189 LOC340512 RPL7AP44
GH09J107024 Enhancer 0.8 Ensembl ENCODE 0.2 +77.9 77887 2.2 MLLT1 IKZF1 IKZF2 ATF7 RUNX3 NBN ATF2 TARDBP ZNF462 RPL7AP44 LOC340512
GH09J107046 Enhancer 0.6 Ensembl 0.2 +56.5 56457 1.1 RELA IKZF2 DPF2 BCL11A IKZF1 BMI1 NR2F1 NBN ATF7 ZNF24 ZNF462 LOC340512 RPL7AP44
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC340512 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC340512 Gene

Genomic Locations for LOC340512 Gene
chr9:106,974,833-107,102,988
(GRCh38/hg38)
Size:
128,156 bases
Orientation:
Minus strand
chr9:109,737,114-109,865,269
(GRCh37/hg19)
Size:
128,156 bases
Orientation:
Minus strand

Genomic View for LOC340512 Gene

Genes around LOC340512 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC340512 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC340512 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC340512 Gene

Proteins for LOC340512 Gene

Post-translational modifications for LOC340512 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC340512 Gene

Domains & Families for LOC340512 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC340512 Gene

Function for LOC340512 Gene

Phenotypes From GWAS Catalog for LOC340512 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC340512 Gene

Localization for LOC340512 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC340512 Gene

Pathways & Interactions for LOC340512 Gene

PathCards logo

SuperPathways for LOC340512 Gene

No Data Available

Interacting Proteins for LOC340512 Gene

Gene Ontology (GO) - Biological Process for LOC340512 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC340512 Gene

Drugs & Compounds for LOC340512 Gene

No Compound Related Data Available

Transcripts for LOC340512 Gene

mRNA/cDNA for LOC340512 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC340512 Gene

Uncharacterized LOC340512:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC340512 Gene

No ASD Table

Relevant External Links for LOC340512 Gene

GeneLoc Exon Structure for
LOC340512

Expression for LOC340512 Gene

SOURCE GeneReport for Unigene cluster for LOC340512 Gene:

Hs.432529
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC340512 Gene

Orthologs for LOC340512 Gene

Evolution for LOC340512 Gene

ENSEMBL:
Gene Tree for LOC340512 (if available)
TreeFam:
Gene Tree for LOC340512 (if available)

No data available for Orthologs for LOC340512 Gene

Paralogs for LOC340512 Gene

No data available for Paralogs for LOC340512 Gene

Variants for LOC340512 Gene

Sequence variations from dbSNP and Humsavar for LOC340512 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000003482 -- 107,073,759(-) A/C intron_variant
rs1000013458 -- 107,033,008(-) C/T intron_variant
rs1000039804 -- 107,057,253(-) T/G intron_variant
rs1000066919 -- 107,040,567(-) A/C intron_variant
rs1000115729 -- 107,001,318(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC340512 Gene

Disorders for LOC340512 Gene

No disorders were found for LOC340512 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC340512 Gene

Publications for LOC340512 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC340512 Gene

Products for LOC340512 Gene

Sources for LOC340512 Gene

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