Aliases for LOC340512 Gene

Data sources for LOC340512 Gene:

RNA type for LOC340512 Gene

lncRNA

Aliases for LOC340512 Gene

External Ids for LOC340512 Gene

Previous GeneCards Identifiers for LOC340512 Gene

  • GC00U903117
  • GC09M103194
  • GC09U900313

Summaries for LOC340512 Gene

GeneCards Summary for LOC340512 Gene

LOC340512 (Uncharacterized LOC340512) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC340512 include Weiss-Kruszka Syndrome.

Additional gene information for LOC340512 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC340512 Gene

Genomics for LOC340512 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC340512 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J107067 Enhancer 0.6 Ensembl ENCODE 0.3 +35.5 35512 2.1 ZNF217 CTBP1 FOXA1 HSALNG0073497 LOC340512 RPL7AP44 ZNF462 RAD23B
GH09J107019 Enhancer 0.8 Ensembl ENCODE 0.2 +83.8 83812 1.6 CTCF BHLHE40 IKZF1 BMI1 NR2F1 ZNF217 IKZF2 MTA2 NBN DPF2 ZNF462 RPL7AP44 HSALNG0073497 LOC340512 RAD23B
GH09J107024 Enhancer 0.7 Ensembl ENCODE 0.2 +79.3 79312 1 IKZF1 ATF2 TARDBP IKZF2 MTA2 NBN RUNX3 ATF7 RELB GATAD2B ZNF462 RPL7AP44 HSALNG0073497 LOC340512 RAD23B
GH09J107049 Enhancer 0.6 Ensembl ENCODE 0.2 +53.6 53612 2.4 ZNF189 POLR2A ZBTB40 CEBPB HSALNG0073497 LOC340512 RPL7AP44 ZNF462 RAD23B
GH09J107039 Enhancer 0.6 Ensembl 0.2 +63.9 63913 0.6 BCL11A SMARCA5 ELF1 IKZF1 BMI1 HDGF PKNOX1 ARID3A IKZF2 MTA2 HSALNG0073497 LOC340512 RPL7AP44 ZNF462 RAD23B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC340512 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC340512 Gene

Latest Assembly
chr9:106,974,832-107,103,813
(GRCh38/hg38)
Size:
128,982 bases
Orientation:
Minus strand

Previous Assembly
chr9:109,737,114-109,865,269
(GRCh37/hg19 by Entrez Gene)
Size:
128,156 bases
Orientation:
Minus strand

chr9:109,737,114-109,865,269
(GRCh37/hg19 by Ensembl)
Size:
128,156 bases
Orientation:
Minus strand

Genomic View for LOC340512 Gene

Genes around LOC340512 on UCSC Golden Path with GeneCards custom track
LOC340512 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC340512 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC340512 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC340512 Gene

Proteins for LOC340512 Gene

Post-translational modifications for LOC340512 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC340512 Gene

Domains & Families for LOC340512 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC340512 Gene

Function for LOC340512 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC340512 Gene

Localization for LOC340512 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC340512 Gene

Pathways & Interactions for LOC340512 Gene

PathCards logo

SuperPathways for LOC340512 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC340512 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC340512 Gene

Drugs & Compounds for LOC340512 Gene

No Compound Related Data Available

Transcripts for LOC340512 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC340512 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005E3FD9_9606 lncRNA 2277 5

RefSeq: NR_126029,

Ensembl: ENST00000439901 (view in UCSC) ,

LncBook: HSALNT0153596,

LNCipedia: lnc-KLF4-14:1,

NONCODE: NONHSAT133856.2,

URS000049F27F_9606 lncRNA 506 3

LncBook: HSALNT0153602,

LNCipedia: lnc-KLF4-14:2,

NONCODE: NONHSAT133857.2,

URS0001BE5465_9606 lncRNA 8442 1

LncBook: HSALNT0153601,

URS0001BD9C64_9606 lncRNA 8431 1

LncBook: HSALNT0153598,

URS0001BCE678_9606 lncRNA 8136 1

LncBook: HSALNT0153600,

LOC340512 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC340512 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC340512 Gene

No ASD Table

Relevant External Links for LOC340512 Gene

GeneLoc Exon Structure for
LOC340512

Expression for LOC340512 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC340512 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC340512

SOURCE GeneReport for Unigene cluster for LOC340512 Gene:

Hs.432529
genes like me logo Genes that share expression patterns with LOC340512: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC340512 Gene

Orthologs for LOC340512 Gene

Evolution for LOC340512 Gene

ENSEMBL:
Gene Tree for LOC340512 (if available)
TreeFam:
Gene Tree for LOC340512 (if available)

No data available for Orthologs for LOC340512 Gene

Paralogs for LOC340512 Gene

No data available for Paralogs for LOC340512 Gene

Variants for LOC340512 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC340512 Gene

SNP ID Clinical significance and condition Chr 09 pos Variation AA Info Type
rs1588212743 Uncertain Significance: Weiss-kruszka syndrome 107,009,545(-) A/G
NM_021224.6(ZNF462):c.7190A>G (p.Glu2397Gly)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC340512 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC340512 Gene

Disorders for LOC340512 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC340512 Gene - From: GCD

Disorder Aliases PubMed IDs
weiss-kruszka syndrome
  • wska
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC340512: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC340512 Gene

Publications for LOC340512 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC340512 Gene

Products for LOC340512 Gene

Sources for LOC340512 Gene