Aliases for LOC340357 Gene

Data sources for LOC340357 Gene:

RNA type for LOC340357 Gene

ncRNA

Aliases for LOC340357 Gene

External Ids for LOC340357 Gene

Previous GeneCards Identifiers for LOC340357 Gene

  • GC00U902787
  • GC08M012398
  • GC08U900468
  • GC08M012667
  • GC08M011165

Summaries for LOC340357 Gene

GeneCards Summary for LOC340357 Gene

LOC340357 (Uncharacterized LOC340357) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC340357 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC340357 Gene

Genomics for LOC340357 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC340357 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J012811 Promoter 0.4 EPDnew 250.7 +1.5 1456 0.1 ZNF140 LOC340357 LONRF1 RPS3AP34 ENSG00000255122 piR-33422-418 LINC00681 lnc-LONRF1-7 TRMT9B
GH08J012813 Enhancer 0.3 Ensembl 278.2 -0.6 -594 1.2 ZFHX2 LOC340357 LONRF1 ENSG00000254423 HSALNG0063517 LINC00681 lnc-LONRF1-7 TRMT9B
GH08J012795 Promoter/Enhancer 1.1 EPDnew FANTOM5 Ensembl 6.8 +18.2 18206 2.8 CEBPA CEBPB ELF3 CEBPG NFIL3 HLF PKNOX1 SMC3 SP1 LINC00681 LONRF1 LOC340357 ENSG00000255556 piR-47162-165 TRMT9B
GH08J012817 Enhancer 0.3 Ensembl 24.9 -5.1 -5119 0.5 NR2F2 LOC340357 HSALNG0063517 LINC00681 lnc-LONRF1-7 LONRF1 TRMT9B
GH08J012838 Enhancer 0.6 Ensembl 10.8 -24.2 -24232 2.5 GABPA BHLHE40 RFX1 ZNF518A ZBTB40 PKNOX1 NR2C1 GABPB1 ZBTB11 CTCF LONRF1 LOC340357 TRMT9B LINC00681 lnc-LONRF1-7 piR-46501-094
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC340357 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC340357 gene promoter:
  • GATA-1
  • POU2F1
  • POU2F1a
  • STAT1
  • STAT1beta
  • STAT2
  • STAT3
  • STAT4
  • STAT5A
  • STAT5B

Genomic Locations for LOC340357 Gene

Latest Assembly
chr8:12,762,575-12,813,007
(GRCh38/hg38)
Size:
50,433 bases
Orientation:
Minus strand

Previous Assembly
chr8:12,623,358-12,668,987
(GRCh37/hg19 by Entrez Gene)
Size:
45,630 bases
Orientation:
Minus strand

chr8:12,623,358-12,668,987
(GRCh37/hg19 by Ensembl)
Size:
45,630 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):5,961,187-6,006,851 (-)

Genomic View for LOC340357 Gene

Genes around LOC340357 on UCSC Golden Path with GeneCards custom track
LOC340357 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC340357 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC340357 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC340357 Gene

Proteins for LOC340357 Gene

Post-translational modifications for LOC340357 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC340357 Gene

Domains & Families for LOC340357 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC340357 Gene

Function for LOC340357 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC340357 Gene

Localization for LOC340357 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC340357 Gene

Pathways & Interactions for LOC340357 Gene

PathCards logo

SuperPathways for LOC340357 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC340357 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC340357 Gene

Drugs & Compounds for LOC340357 Gene

No Compound Related Data Available

Transcripts for LOC340357 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC340357 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000038A8AA_9606 lncRNA 1252 5

RefSeq: NR_152742,

Ensembl: ENST00000534827 (view in UCSC) ,

LncBook: HSALNT0133260,

LNCipedia: lnc-LONRF1-1:1,

NONCODE: NONHSAT125180.2,

URS00000A4150_9606 lncRNA 765 3

Ensembl: ENST00000530228 (view in UCSC) ,

LNCipedia: lnc-LONRF1-1:4,

NONCODE: NONHSAT125181.2,

URS0000CCE064_9606 lncRNA 1062 1

RefSeq: NR_015383,

URS00008B6D5C_9606 lncRNA 776 2

LNCipedia: lnc-LONRF1-1:5,

NONCODE: NONHSAT125182.2,

URS0001BE05CA_9606 lncRNA 4848 1

LncBook: HSALNT0133259,

LOC340357 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC340357 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC340357 Gene

No ASD Table

Relevant External Links for LOC340357 Gene

GeneLoc Exon Structure for
LOC340357

Expression for LOC340357 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC340357 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC340357

SOURCE GeneReport for Unigene cluster for LOC340357 Gene:

Hs.434302
genes like me logo Genes that share expression patterns with LOC340357: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC340357 Gene

Orthologs for LOC340357 Gene

Evolution for LOC340357 Gene

ENSEMBL:
Gene Tree for LOC340357 (if available)
TreeFam:
Gene Tree for LOC340357 (if available)

No data available for Orthologs for LOC340357 Gene

Paralogs for LOC340357 Gene

No data available for Paralogs for LOC340357 Gene

Variants for LOC340357 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC340357 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC340357 Gene

Variant ID Type Subtype PubMed ID
dgv2040e212 CNV loss 25503493
esv2750483 CNV loss 17666407
esv32567 CNV loss 17666407
esv33493 CNV loss 17666407
esv3444192 CNV insertion 20981092
nsv1161731 CNV deletion 26073780
nsv442436 CNV loss 18776908

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC340357 Gene

Disorders for LOC340357 Gene

Additional Disease Information for LOC340357

Open Targets Platform
Open Targets Platform

No disorders were found for LOC340357 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC340357 Gene

Publications for LOC340357 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC340357 Gene

Products for LOC340357 Gene

Sources for LOC340357 Gene