Aliases for LOC339803 Gene

Subcategory (RNA class) for LOC339803 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC339803 Gene

  • Uncharacterized LOC339803 3
  • Alternative Protein LOC339803 13
  • Novel Transcript 5
  • HSALNG0015289 167
  • NONHSAG027873 92
  • Lnc-USP34-1 168
  • AC016747.1 5
  • HCG1783888 13

External Ids for LOC339803 Gene

Previous GeneCards Identifiers for LOC339803 Gene

  • GC00U907491
  • GC02M061326
  • GC02U900182
  • GC02M061344
  • GC02M061369

Summaries for LOC339803 Gene

GeneCards Summary for LOC339803 Gene

LOC339803 (Uncharacterized LOC339803) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC339803 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC339803 Gene

Genomics for LOC339803 Gene

GeneHancer (GH) Regulatory Elements for LOC339803 Gene

Promoters and enhancers for LOC339803 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC339803 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC339803 gene promoter:
  • AREB6
  • FOXJ2
  • FOXJ2 (long isoform)
  • Fra-1
  • JunB
  • JunD
  • Pax-4a
  • PPAR-gamma1
  • PPAR-gamma2

Genomic Locations for LOC339803 Gene

Genomic Locations for LOC339803 Gene
chr2:61,140,658-61,145,107
(GRCh38/hg38)
Size:
4,450 bases
Orientation:
Minus strand
chr2:61,368,727-61,372,110
(GRCh37/hg19)
Size:
3,384 bases
Orientation:
Minus strand

Genomic View for LOC339803 Gene

Genes around LOC339803 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC339803 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC339803 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC339803 Gene

Proteins for LOC339803 Gene

  • Protein details for LOC339803 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    L8E9F7-L8E9F7_HUMAN
    Recommended name:
    Alternative protein LOC339803
    Protein Accession:
    L8E9F7

    Protein attributes for LOC339803 Gene

    Size:
    92 amino acids
    Molecular mass:
    10360 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC339803 Gene

Post-translational modifications for LOC339803 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC339803 Gene

Domains & Families for LOC339803 Gene

Protein Domains for LOC339803 Gene

ProtoNet:
genes like me logo Genes that share domains with LOC339803: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC339803 Gene

Function for LOC339803 Gene

Phenotypes From GWAS Catalog for LOC339803 Gene

genes like me logo Genes that share phenotypes with LOC339803: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC339803 Gene

Localization for LOC339803 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC339803 Gene

Pathways & Interactions for LOC339803 Gene

PathCards logo

SuperPathways for LOC339803 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC339803 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC339803 Gene

Drugs & Compounds for LOC339803 Gene

No Compound Related Data Available

Transcripts for LOC339803 Gene

mRNA/cDNA for LOC339803 Gene

14 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
5 LncBook transcripts :
15 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC339803 Gene

No ASD Table

Relevant External Links for LOC339803 Gene

GeneLoc Exon Structure for
LOC339803

Expression for LOC339803 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC339803 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC339803

SOURCE GeneReport for Unigene cluster for LOC339803 Gene:

Hs.252433
genes like me logo Genes that share expression patterns with LOC339803: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC339803 Gene

Orthologs for LOC339803 Gene

Evolution for LOC339803 Gene

ENSEMBL:
Gene Tree for LOC339803 (if available)
TreeFam:
Gene Tree for LOC339803 (if available)

No data available for Orthologs for LOC339803 Gene

Paralogs for LOC339803 Gene

No data available for Paralogs for LOC339803 Gene

Variants for LOC339803 Gene

Additional dbSNP identifiers (rs#s) for LOC339803 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC339803 Gene

Variant ID Type Subtype PubMed ID
esv2760616 CNV loss 21179565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC339803 Gene

Disorders for LOC339803 Gene

No disorders were found for LOC339803 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC339803 Gene

Publications for LOC339803 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 13 54
  2. Direct detection of alternative open reading frames translation products in human significantly expands the proteome. (PMID: 23950983) Vanderperre B … Roucou X (PloS one 2013) 13 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC339803 Gene

Products for LOC339803 Gene

Sources for LOC339803 Gene