Aliases for LOC339298 Gene

Data sources for LOC339298 Gene:

Subcategory (RNA class) for LOC339298 Gene

lncRNA

Aliases for LOC339298 Gene

External Ids for LOC339298 Gene

Previous GeneCards Identifiers for LOC339298 Gene

  • GC00U906480
  • GC18P073597
  • GC18U900150
  • GC18P073835

Summaries for LOC339298 Gene

GeneCards Summary for LOC339298 Gene

LOC339298 (Uncharacterized LOC339298) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC339298 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC339298 Gene

Genomics for LOC339298 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC339298 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076130 Enhancer 0.5 ENCODE 0.4 +8.4 8353 1.4 JUND NFE2 ATF2 ATF3 ATF7 lnc-ZNF516-7 LOC339298 HSALNG0122539 LOC105372204 ZNF516
GH18J076134 Enhancer 0.3 Ensembl 0.4 +11.8 11833 0.4 TCF7 RUNX3 HSALNG0122539 lnc-ZNF516-7 LOC339298 LOC105372204 ZNF516
GH18J076136 Enhancer 0.3 UCNEbase 0.4 +13.9 13902 0.4 HSALNG0122539 lnc-ZNF516-7 LOC339298 LOC105372204 ZNF516
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC339298 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC339298 Gene

Latest Assembly
chr18:76,122,968-76,145,259
(GRCh38/hg38)
Size:
22,292 bases
Orientation:
Plus strand

Previous Assembly
chr18:73,834,953-73,857,210
(GRCh37/hg19 by Entrez Gene)
Size:
22,258 bases
Orientation:
Plus strand

chr18:73,834,953-73,857,210
(GRCh37/hg19 by Ensembl)
Size:
22,258 bases
Orientation:
Plus strand

Genomic View for LOC339298 Gene

Genes around LOC339298 on UCSC Golden Path with GeneCards custom track
LOC339298 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC339298 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC339298 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC339298 Gene

Proteins for LOC339298 Gene

Post-translational modifications for LOC339298 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC339298 Gene

Domains & Families for LOC339298 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC339298 Gene

Function for LOC339298 Gene

Phenotypes From GWAS Catalog for LOC339298 Gene

Phenotypes for LOC339298 Gene

genes like me logo Genes that share phenotypes with LOC339298: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC339298 Gene

Localization for LOC339298 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC339298 Gene

Pathways & Interactions for LOC339298 Gene

PathCards logo

SuperPathways for LOC339298 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC339298 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC339298 Gene

Drugs & Compounds for LOC339298 Gene

No Compound Related Data Available

Transcripts for LOC339298 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC339298 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B6048_9606 lncRNA 2794 4

Ensembl: ENST00000584677 (view in UCSC) ,

LncBook: HSALNT0253269,

LNCipedia: lnc-ZNF236-13:1,

NONCODE: NONHSAT059904.2,

URS000075EBA9_9606 lncRNA 2794 1

RefSeq: NR_040034,

URS0000EF4927_9606 lncRNA 1936 1

Ensembl: ENST00000653783 (view in UCSC) ,

URS0000EF44D3_9606 lncRNA 1263 1

Ensembl: ENST00000664600 (view in UCSC) ,

URS00008B7EA2_9606 lncRNA 1089 3

LncBook: HSALNT0253275,

LNCipedia: lnc-ZNF236-12:1,

NONCODE: NONHSAT059907.2,

LOC339298 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC339298 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC339298 Gene

No ASD Table

Relevant External Links for LOC339298 Gene

GeneLoc Exon Structure for
LOC339298

Expression for LOC339298 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC339298 Gene

mRNA differential expression in normal tissues according to GTEx for LOC339298 Gene

This gene is overexpressed in Testis (x46.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC339298

SOURCE GeneReport for Unigene cluster for LOC339298 Gene:

Hs.151215
genes like me logo Genes that share expression patterns with LOC339298: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC339298 Gene

Orthologs for LOC339298 Gene

Evolution for LOC339298 Gene

ENSEMBL:
Gene Tree for LOC339298 (if available)
TreeFam:
Gene Tree for LOC339298 (if available)

No data available for Orthologs for LOC339298 Gene

Paralogs for LOC339298 Gene

No data available for Paralogs for LOC339298 Gene

Variants for LOC339298 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC339298 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC339298 Gene

Variant ID Type Subtype PubMed ID
esv3643155 CNV loss 21293372
nsv458301 CNV loss 19166990
nsv577659 CNV loss 21841781
nsv577660 CNV loss 21841781

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC339298 Gene

Disorders for LOC339298 Gene

No disorders were found for LOC339298 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC339298 Gene

Publications for LOC339298 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC339298 Gene

Products for LOC339298 Gene

Sources for LOC339298 Gene