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Aliases for LOC339298 Gene
Subcategory (RNA class) for LOC339298 Gene
lncRNA
Aliases for LOC339298 Gene
External Ids for LOC339298 Gene
- NCBI Entrez Gene: 339298
- Ensembl: ENSG00000263547
Previous GeneCards Identifiers for LOC339298 Gene
- GC00U906480
- GC18P073597
- GC18U900150
- GC18P073835
Summaries for LOC339298 Gene
GeneCards Summary for LOC339298 Gene
LOC339298 (Uncharacterized LOC339298) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC339298 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC339298 Gene
Genomics for LOC339298 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC339298 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J076130 | Enhancer | 0.5 | ENCODE | 0.4 | +8.4 | 8353 | 1.4 | JUND NFE2 ATF2 ATF3 ATF7 | lnc-ZNF516-7 LOC339298 HSALNG0122539 LOC105372204 ZNF516 | |
| GH18J076134 | Enhancer | 0.3 | Ensembl | 0.4 | +11.8 | 11833 | 0.4 | TCF7 RUNX3 | HSALNG0122539 lnc-ZNF516-7 LOC339298 LOC105372204 ZNF516 | |
| GH18J076136 | Enhancer | 0.3 | UCNEbase | 0.4 | +13.9 | 13902 | 0.4 | HSALNG0122539 lnc-ZNF516-7 LOC339298 LOC105372204 ZNF516 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC339298 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC339298 Gene
Latest Assembly
- chr18:76,122,968-76,145,259
- (GRCh38/hg38)
- Size:
- 22,292 bases
- Orientation:
- Plus strand
Previous Assembly
- chr18:73,834,953-73,857,210
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 22,258 bases
- Orientation:
- Plus strand
- chr18:73,834,953-73,857,210
- (GRCh37/hg19 by Ensembl)
- Size:
- 22,258 bases
- Orientation:
- Plus strand
Genomic View for LOC339298 Gene
Genes around LOC339298 on UCSC Golden Path with GeneCards custom track
LOC339298 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18q23 by Entrez Gene
- 18q23 by Ensembl
LOC339298 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC339298 Gene
Proteins for LOC339298 Gene
Post-translational modifications for LOC339298 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC339298 Gene
Domains & Families for LOC339298 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC339298 Gene
Function for LOC339298 Gene
Phenotypes From GWAS Catalog for LOC339298 Gene
Phenotypes for LOC339298 Gene
- GenomeRNAi human phenotypes for LOC339298:
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC339298 Gene
Localization for LOC339298 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC339298 Gene
Transcripts for LOC339298 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC339298 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008B6048_9606 | lncRNA | 2794 | 4 |
Ensembl: ENST00000584677 (view in UCSC) , LncBook: HSALNT0253269, LNCipedia: lnc-ZNF236-13:1, NONCODE: NONHSAT059904.2, |
| URS000075EBA9_9606 | lncRNA | 2794 | 1 |
RefSeq: NR_040034, |
| URS0000EF4927_9606 | lncRNA | 1936 | 1 |
Ensembl: ENST00000653783 (view in UCSC) , |
| URS0000EF44D3_9606 | lncRNA | 1263 | 1 |
Ensembl: ENST00000664600 (view in UCSC) , |
| URS00008B7EA2_9606 | lncRNA | 1089 | 3 |
LncBook: HSALNT0253275, LNCipedia: lnc-ZNF236-12:1, NONCODE: NONHSAT059907.2, |
LOC339298 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC339298 Gene
- 1 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000578560 477 nts (view in UCSC)
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC339298 Gene
- GeneLoc Exon Structure for
- LOC339298
Expression for LOC339298 Gene
mRNA differential expression in normal tissues according to GTEx for LOC339298 Gene
This gene is overexpressed in Testis (x46.6).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC339298
SOURCE GeneReport for Unigene cluster for LOC339298 Gene:
Hs.151215Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC339298 Gene
Orthologs for LOC339298 Gene
No data available for Orthologs for LOC339298 Gene
Paralogs for LOC339298 Gene
No data available for Paralogs for LOC339298 Gene
Variants for LOC339298 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC339298 Gene
Disorders for LOC339298 Gene
No disorders were found for LOC339298 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC339298 Gene
Publications for LOC339298 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LOC339298 Gene
Products for LOC339298 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC339298
- Origene Custom Protein Services for LOC339298
- Browse OriGene Inhibitory RNA Products For LOC339298
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC339298
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC339298
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC339298
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC339298
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC339298
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC339298
Sources for LOC339298 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB