Aliases for LOC339059 Gene

Subcategory (RNA class) for LOC339059 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC339059 Gene

  • Uncharacterized LOC339059 3
  • Novel Transcript, Antisense To FAM38A 5
  • NONHSAG020307.2 91
  • AC138028.1 5
  • Lnc-CTU2-5 165

External Ids for LOC339059 Gene

Previous GeneCards Identifiers for LOC339059 Gene

  • GC00U905968

Summaries for LOC339059 Gene

GeneCards Summary for LOC339059 Gene

LOC339059 (Uncharacterized LOC339059) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC339059 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC339059 Gene

Genomics for LOC339059 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC339059 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J088743 Enhancer 1 ENCODE dbSUPER 606.9 +1.3 1273 1.5 HNRNPL GATAD2A CTCF IKZF1 TARDBP ZNF143 REST NR2C1 RAD21 IKZF2 LOC339059 PIEZO1 RNF166 LOC100289580 APRT HSALNG0113537 CTU2
GH16J088742 Enhancer 0.2 dbSUPER 605.6 +0.2 198 0.7 LOC339059 ENSG00000260617 HSALNG0113537 CTU2 PIEZO1
GH16J088744 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.5 +3.7 3731 3.4 CREB1 CTCF REST POLR2A KLF9 SP1 RFX1 MTA3 EGR1 SMARCA5 PIEZO1 SNAI3-AS1 CTU2 LOC339059 APRT HSALNG0113537
GH16J088738 Enhancer 0.7 Ensembl ENCODE dbSUPER 6 -3.2 -3195 1.3 HNRNPL STAT1 ZBTB33 LOC339059 ENSG00000260617 LOC100289580 lnc-RNF166-5 CTU2 PIEZO1
GH16J089308 Enhancer 0.7 ENCODE dbSUPER 6 +565.8 565801 0.2 CTCF RAD21 SIN3A ZNF143 ZNF785 MNT SMC3 TRIM22 LOC339059 NONHSAG020339.2 LOC100287036 ZNF778 ANKRD11 lnc-SLC22A31-7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC339059 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC339059 Gene

Genomic Locations for LOC339059 Gene
chr16:88,742,767-88,745,748
(GRCh38/hg38)
Size:
2,982 bases
Orientation:
Plus strand
chr16:88,809,175-88,812,175
(GRCh37/hg19)
Size:
3,001 bases
Orientation:
Plus strand

Genomic View for LOC339059 Gene

Genes around LOC339059 on UCSC Golden Path with GeneCards custom track
LOC339059 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC339059 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC339059 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC339059 Gene

Proteins for LOC339059 Gene

Post-translational modifications for LOC339059 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC339059 Gene

Domains & Families for LOC339059 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC339059 Gene

Function for LOC339059 Gene

Phenotypes From GWAS Catalog for LOC339059 Gene

Phenotypes for LOC339059 Gene

genes like me logo Genes that share phenotypes with LOC339059: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC339059 Gene

Localization for LOC339059 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC339059 Gene

Pathways & Interactions for LOC339059 Gene

PathCards logo

SuperPathways for LOC339059 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC339059 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC339059 Gene

Drugs & Compounds for LOC339059 Gene

No Compound Related Data Available

Transcripts for LOC339059 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC339059 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003EF267_9606 lncRNA 2137 4

RefSeq: NR_120387,

Ensembl: ENST00000333666 (view in UCSC) ,

LNCipedia: lnc-CTU2-5:1,

NONCODE: NONHSAT144429.2,

URS00002BA16E_9606 lncRNA 1900 2

Ensembl: ENST00000567588 (view in UCSC) ,

LNCipedia: lnc-CTU2-5:2,

URS00008B2118_9606 lncRNA 2184 2

LNCipedia: lnc-CTU2-5:3,

NONCODE: NONHSAT144430.2,

LOC339059 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC339059 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC339059 Gene

No ASD Table

Relevant External Links for LOC339059 Gene

GeneLoc Exon Structure for
LOC339059

Expression for LOC339059 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC339059 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC339059

genes like me logo Genes that share expression patterns with LOC339059: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC339059 Gene

Orthologs for LOC339059 Gene

Evolution for LOC339059 Gene

ENSEMBL:
Gene Tree for LOC339059 (if available)
TreeFam:
Gene Tree for LOC339059 (if available)

No data available for Orthologs for LOC339059 Gene

Paralogs for LOC339059 Gene

No data available for Paralogs for LOC339059 Gene

Variants for LOC339059 Gene

Additional dbSNP identifiers (rs#s) for LOC339059 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC339059 Gene

Variant ID Type Subtype PubMed ID
dgv3064n100 CNV gain 25217958
dgv3065n100 CNV gain 25217958
nsv1061256 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv1160442 CNV deletion 26073780
nsv1927 CNV insertion 18451855
nsv471113 CNV loss 18288195
nsv471114 CNV gain 18288195
nsv482951 CNV loss 15286789
nsv517643 CNV loss 19592680
nsv573674 CNV gain 21841781
nsv573675 CNV loss 21841781
nsv833327 CNV loss 17160897
nsv952070 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC339059 Gene

Disorders for LOC339059 Gene

Additional Disease Information for LOC339059

No disorders were found for LOC339059 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC339059 Gene

Publications for LOC339059 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC339059 Gene

Products for LOC339059 Gene

Sources for LOC339059 Gene