Aliases for LOC338963 Gene

Aliases for LOC338963 Gene

  • Epididymal Protein Pseudogene 3

External Ids for LOC338963 Gene

Previous GeneCards Identifiers for LOC338963 Gene

  • GC00U902345
  • GC15M080963
  • GC15U900291
  • GC15M081176
  • GC15M083381

Summaries for LOC338963 Gene

GeneCards Summary for LOC338963 Gene

LOC338963 (Epididymal Protein Pseudogene) is a Pseudogene.

Additional gene information for LOC338963 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC338963 Gene

Genomics for LOC338963 Gene

GeneHancer (GH) Regulatory Elements for LOC338963 Gene

Promoters and enhancers for LOC338963 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J082708 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 +4.5 4538 2.3 HNRNPK ZNF217 EP300 SIN3A NRF1 USF1 REST ZBTB10 ZBTB11 RBM34 AP3B2 piR-30444-112 piR-38716-048 SAXO2 SNHG21 C15orf40 CPEB1 HDGFL3 EFL1 ENSG00000228141
GH15J082710 Promoter 0.3 Ensembl 0.7 +3.1 3093 0.2 AP3B2 ENSG00000228141 LOC338963 lnc-AP3B2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC338963 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC338963 gene promoter:
  • ARP-1
  • ATF
  • FOXI1
  • FOXL1
  • FOXO1
  • GCNF
  • GCNF-1
  • GCNF-2
  • HFH-3
  • RORalpha2

Genomic Locations for LOC338963 Gene

Genomic Locations for LOC338963 Gene
chr15:82,710,471-82,713,993
(GRCh38/hg38)
Size:
3,523 bases
Orientation:
Minus strand

Genomic View for LOC338963 Gene

Genes around LOC338963 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC338963 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC338963 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC338963 Gene

Proteins for LOC338963 Gene

Post-translational modifications for LOC338963 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC338963 Gene

Domains & Families for LOC338963 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC338963 Gene

Function for LOC338963 Gene

Phenotypes From GWAS Catalog for LOC338963 Gene

Phenotypes for LOC338963 Gene

genes like me logo Genes that share phenotypes with LOC338963: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC338963 Gene

Localization for LOC338963 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC338963 Gene

Pathways & Interactions for LOC338963 Gene

PathCards logo

SuperPathways for LOC338963 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC338963 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC338963 Gene

Drugs & Compounds for LOC338963 Gene

No Compound Related Data Available

Transcripts for LOC338963 Gene

mRNA/cDNA for LOC338963 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC338963 Gene

No ASD Table

Relevant External Links for LOC338963 Gene

GeneLoc Exon Structure for
LOC338963

Expression for LOC338963 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC338963 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC338963

SOURCE GeneReport for Unigene cluster for LOC338963 Gene:

Hs.254464
genes like me logo Genes that share expression patterns with LOC338963: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC338963 Gene

Orthologs for LOC338963 Gene

No data available for Orthologs and Evolution for LOC338963 Gene

Paralogs for LOC338963 Gene

No data available for Paralogs for LOC338963 Gene

Variants for LOC338963 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC338963 Gene

Variant ID Type Subtype PubMed ID
dgv2637n100 CNV gain 25217958
esv2674021 CNV deletion 23128226
esv34318 CNV loss 17911159
esv3637058 CNV gain 21293372
nsv1120052 OTHER inversion 24896259
nsv817702 CNV loss 17921354
nsv952013 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC338963 Gene

Disorders for LOC338963 Gene

No disorders were found for LOC338963 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC338963 Gene

Publications for LOC338963 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC338963 Gene

Products for LOC338963 Gene

Sources for LOC338963 Gene