Aliases for LOC338694 Gene

Data sources for LOC338694 Gene:

RNA type for LOC338694 Gene

lncRNA

Aliases for LOC338694 Gene

External Ids for LOC338694 Gene

Previous GeneCards Identifiers for LOC338694 Gene

  • GC00U901516
  • GC11M069164
  • GC11M068690
  • GC11U900604

Summaries for LOC338694 Gene

GeneCards Summary for LOC338694 Gene

LOC338694 (Uncharacterized LOC338694) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC338694 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC338694 Gene

Genomics for LOC338694 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC338694 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J069173 Enhancer 0.6 Ensembl ENCODE 250.7 -2.0 -1973 1.9 EP300 CEBPB HCFC1 LOC338694 LTO1 lnc-TPCN2-7 LOC105369366 lnc-TPCN2-6 lnc-TPCN2-8 SMIM38 MYEOV
GH11J069172 Enhancer 0.3 Ensembl 250.7 +0.2 178 0.4 ZNF10 LOC338694 lnc-TPCN2-7 piR-40257 LTO1 LOC105369366 lnc-TPCN2-6 SMIM38 MYEOV
GH11J069170 Enhancer 0.2 Ensembl 250.7 +1.2 1179 0.4 LOC338694 lnc-TPCN2-7 piR-40257 LTO1 LOC105369366 lnc-TPCN2-6 SMIM38 MYEOV
GH11J069292 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.4 -126.4 -126428 11.6 BCLAF1 SP1 ZNF207 IKZF1 MYC NCOR1 JUND ZNF592 ZMYM3 POLR2A MYEOV LTO1 TPCN2 PPP6R3 IGHMBP2 ENSG00000260808 FADD MRGPRF-AS1 ENSG00000260877 LOC338694
GH11J069121 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 6.8 +49.0 49026 2.8 ZNF600 JUND BRCA1 POLR2A ZIC2 ZNF217 MXD4 CEBPB KLF11 MAX HSALNG0085309 HSALNG0085312 LTO1 LOC338694 MRGPRF-AS1 SMIM38 ENSG00000287725 TPCN2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC338694 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC338694 Gene

Latest Assembly
chr11:69,138,191-69,172,179
(GRCh38/hg38)
Size:
33,989 bases
Orientation:
Minus strand

Previous Assembly
chr11:68,914,696-68,939,030
(GRCh37/hg19 by Entrez Gene)
Size:
24,335 bases
Orientation:
Minus strand

chr11:68,914,696-68,939,032
(GRCh37/hg19 by Ensembl)
Size:
24,337 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr11(ALT_REF_LOCI_1):3,030-6,272 (-)

Genomic View for LOC338694 Gene

Genes around LOC338694 on UCSC Golden Path with GeneCards custom track
LOC338694 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC338694 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC338694 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC338694 Gene

Proteins for LOC338694 Gene

Post-translational modifications for LOC338694 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC338694 Gene

Domains & Families for LOC338694 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC338694 Gene

Function for LOC338694 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC338694 Gene

Localization for LOC338694 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC338694 Gene

Pathways & Interactions for LOC338694 Gene

PathCards logo

SuperPathways for LOC338694 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC338694 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC338694 Gene

Drugs & Compounds for LOC338694 Gene

No Compound Related Data Available

Transcripts for LOC338694 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC338694 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000040BD0E_9606 lncRNA 993 3

Ensembl: ENST00000562772 (view in UCSC) ,

LNCipedia: lnc-MRGPRF-3:1,

NONCODE: NONHSAT022577.2,

URS000075D544_9606 lncRNA 988 1

RefSeq: NR_104161,

URS0001BFAA1F_9606 lncRNA 10939 1

LncBook: HSALNT0177535,

URS0001BCE902_9606 lncRNA 10642 1

LncBook: HSALNT0177534,

URS00008B2C61_9606 lncRNA 988 1

LNCipedia: lnc-MRGPRF-3:2,

LOC338694 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC338694 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC338694 Gene

No ASD Table

Relevant External Links for LOC338694 Gene

GeneLoc Exon Structure for
LOC338694

Expression for LOC338694 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC338694 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC338694

SOURCE GeneReport for Unigene cluster for LOC338694 Gene:

Hs.564235
genes like me logo Genes that share expression patterns with LOC338694: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC338694 Gene

Orthologs for LOC338694 Gene

Evolution for LOC338694 Gene

ENSEMBL:
Gene Tree for LOC338694 (if available)
TreeFam:
Gene Tree for LOC338694 (if available)

No data available for Orthologs for LOC338694 Gene

Paralogs for LOC338694 Gene

No data available for Paralogs for LOC338694 Gene

Variants for LOC338694 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC338694 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC338694 Gene

Variant ID Type Subtype PubMed ID
esv2744681 CNV deletion 23290073
nsv509425 CNV insertion 20534489
nsv555319 CNV loss 21841781
nsv832196 CNV loss 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC338694 Gene

Disorders for LOC338694 Gene

No disorders were found for LOC338694 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC338694 Gene

Publications for LOC338694 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC338694 Gene

Products for LOC338694 Gene

Sources for LOC338694 Gene