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Aliases for LOC286359 Gene

Subcategory (RNA class) for LOC286359 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC286359 Gene

  • Uncharacterized LOC286359 3
  • AL512590.1 5

External Ids for LOC286359 Gene

Previous GeneCards Identifiers for LOC286359 Gene

  • GC09M091896
  • GC09M093610
  • GC09M095532
  • GC09M097232
  • GC09U900771
  • GC09M099195
  • GC09M100149

Summaries for LOC286359 Gene

GeneCards Summary for LOC286359 Gene

LOC286359 (Uncharacterized LOC286359) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC286359 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC286359 Gene

Genomics for LOC286359 Gene

GeneHancer (GH) Regulatory Elements for LOC286359 Gene

Promoters and enhancers for LOC286359 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I097393 Enhancer 0.8 dbSUPER 550.8 +1.8 1797 2.4 FOXA2 THRB ZSCAN9 RARA CREM THAP11 HMG20B SP5 PPARG KAT8 LOC286359 LOC105376167 VN1R51P CCDC180 GAS2L1P2 MIR1302-8
GH09I097400 Enhancer 1 Ensembl ENCODE 0.8 -2.5 -2503 0.4 ELF3 RB1 MLX ARID4B ZNF48 RAD21 RARA ARID2 SCRT2 ZNF143 ENSG00000203279 LOC105376167 LOC286359 TDRD7
GH09I097399 Enhancer 0.8 Ensembl 0.8 -2.8 -2809 0.2 ELF3 RB1 MLX ARID4B ZNF48 RAD21 RARA ARID2 ZNF143 FOS ENSG00000203279 LOC105376167 LOC286359 TDRD7
GH09I097384 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +10.7 10668 3.5 ATF1 FOXA2 ARNT ARID4B SIN3A ZNF2 ZNF48 ZNF766 ZNF143 ATF7 CCDC180 VN1R51P GAS2L1P2 LOC286359 LOC105376167 MIR1302-8
GH09I097404 Enhancer 1.1 ENCODE dbSUPER 0.4 -9.4 -9378 3.3 PKNOX1 FOXA2 MLX ARID4B DMAP1 ETS1 YY1 TCF12 ATF7 ZHX2 MFSD14C LOC441454 TSTD2 ENSG00000203279 FAM220CP VN1R51P TDRD7 LOC286359 LOC105376167
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC286359 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC286359 gene promoter:

Genomic Locations for LOC286359 Gene

Genomic Locations for LOC286359 Gene
chr9:97,386,240-97,396,691
(GRCh38/hg38)
Size:
10,452 bases
Orientation:
Minus strand
chr9:100,148,522-100,158,973
(GRCh37/hg19)

Genomic View for LOC286359 Gene

Genes around LOC286359 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC286359 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC286359 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC286359 Gene

Proteins for LOC286359 Gene

Post-translational modifications for LOC286359 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC286359 Gene

Domains & Families for LOC286359 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC286359 Gene

Function for LOC286359 Gene

Phenotypes for LOC286359 Gene

genes like me logo Genes that share phenotypes with LOC286359: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC286359 Gene

Localization for LOC286359 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC286359 Gene

Pathways & Interactions for LOC286359 Gene

SuperPathways for LOC286359 Gene

No Data Available

Interacting Proteins for LOC286359 Gene

Gene Ontology (GO) - Biological Process for LOC286359 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC286359 Gene

Drugs & Compounds for LOC286359 Gene

No Compound Related Data Available

Transcripts for LOC286359 Gene

mRNA/cDNA for LOC286359 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC286359 Gene

Uncharacterized LOC286359:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC286359 Gene

No ASD Table

Relevant External Links for LOC286359 Gene

GeneLoc Exon Structure for
LOC286359

Expression for LOC286359 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC286359 Gene

mRNA differential expression in normal tissues according to GTEx for LOC286359 Gene

This gene is overexpressed in Testis (x48.1).

SOURCE GeneReport for Unigene cluster for LOC286359 Gene:

Hs.132262
genes like me logo Genes that share expression patterns with LOC286359: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC286359 Gene

Orthologs for LOC286359 Gene

Evolution for LOC286359 Gene

ENSEMBL:
Gene Tree for LOC286359 (if available)
TreeFam:
Gene Tree for LOC286359 (if available)

No data available for Orthologs for LOC286359 Gene

Paralogs for LOC286359 Gene

No data available for Paralogs for LOC286359 Gene

Variants for LOC286359 Gene

Sequence variations from dbSNP and Humsavar for LOC286359 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1001051729 -- 97,394,176(-) G/A intron_variant
rs1001400850 -- 97,393,916(-) A/G intron_variant
rs1001725632 -- 97,397,175(-) C/T upstream_transcript_variant
rs1001769393 -- 97,390,403(-) C/T downstream_transcript_variant
rs1002368839 -- 97,396,588(-) C/A non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC286359 Gene

Disorders for LOC286359 Gene

Additional Disease Information for LOC286359

No disorders were found for LOC286359 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC286359 Gene

Publications for LOC286359 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LOC286359 Gene

Sources for LOC286359 Gene

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