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Aliases for LOC285847 Gene

Subcategory (RNA class) for LOC285847 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC285847 Gene

  • Uncharacterized LOC285847 3

External Ids for LOC285847 Gene

Previous GeneCards Identifiers for LOC285847 Gene

  • GC06M035683
  • GC06U900484
  • GC06M036053
  • GC06M036090
  • GC06M036302
  • GC06M036669
  • GC06M037022
  • GC06M037372
  • GC06M037728
  • GC06M038074

Summaries for LOC285847 Gene

GeneCards Summary for LOC285847 Gene

LOC285847 (Uncharacterized LOC285847) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC285847 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC285847 Gene

Genomics for LOC285847 Gene

GeneHancer (GH) Regulatory Elements for LOC285847 Gene

Promoters and enhancers for LOC285847 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J035736 Enhancer 1.2 Ensembl ENCODE dbSUPER 650.7 +0.6 580 0.3 ELF3 RB1 ARID4B ZSCAN9 RAD21 SLC30A9 ZNF335 ARID2 ZNF207 ZNF143 ENSG00000232909 LOC285847 ARMC12
GH06J035739 Enhancer 1.1 ENCODE dbSUPER 650.7 -0.8 -762 0.2 ARNT ARID4B YY1 E2F8 ARID2 ZNF143 ATF7 RUNX3 NCOA1 REST LOC285847 ENSG00000232909 ARMC12 LOC100652794
GH06J035737 Promoter/Enhancer 0.7 EPDnew dbSUPER 650.7 -0.1 -98 0.1 ARMC12 ENSG00000232909 LOC285847 ENSG00000228559 LOC100652794
GH06J035734 Enhancer 0.4 dbSUPER 650.7 +1.6 1584 0.9 KLF9 BATF ARMC12 LOC285847 ENSG00000232909 ENSG00000228559
GH06J035723 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.9 7850 10.8 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 ZNF548 MCM3 SP3 NFYC ARMC12 FKBP5 TAF11 SRSF3 ZNF76 ENSG00000272374 RPL10A STK38 ENSG00000219023 FANCE
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC285847 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC285847 gene promoter:
  • E2F
  • SEF-1 (1)
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • HNF-3beta
  • TBP
  • LCR-F1

Genomic Locations for LOC285847 Gene

Genomic Locations for LOC285847 Gene
chr6:35,726,762-35,736,947
(GRCh38/hg38)
Size:
10,186 bases
Orientation:
Minus strand

Genomic View for LOC285847 Gene

Genes around LOC285847 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC285847 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC285847 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC285847 Gene

Proteins for LOC285847 Gene

Post-translational modifications for LOC285847 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC285847 Gene

Domains & Families for LOC285847 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC285847 Gene

Function for LOC285847 Gene

Phenotypes From GWAS Catalog for LOC285847 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC285847 Gene

Localization for LOC285847 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC285847 Gene

Pathways & Interactions for LOC285847 Gene

SuperPathways for LOC285847 Gene

No Data Available

Interacting Proteins for LOC285847 Gene

Gene Ontology (GO) - Biological Process for LOC285847 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC285847 Gene

Drugs & Compounds for LOC285847 Gene

No Compound Related Data Available

Transcripts for LOC285847 Gene

mRNA/cDNA for LOC285847 Gene

(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC285847 Gene

No ASD Table

Relevant External Links for LOC285847 Gene

GeneLoc Exon Structure for
LOC285847

Expression for LOC285847 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC285847 Gene

genes like me logo Genes that share expression patterns with LOC285847: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC285847 Gene

Orthologs for LOC285847 Gene

No data available for Orthologs and Evolution for LOC285847 Gene

Paralogs for LOC285847 Gene

No data available for Paralogs for LOC285847 Gene

Variants for LOC285847 Gene

Sequence variations from dbSNP and Humsavar for LOC285847 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs386352286 uncertain-significance, not provided 35,737,299(-) C/T upstream_transcript_variant
rs1000274524 -- 35,736,097(-) G/ intron_variant
rs1000407033 -- 35,735,821(-) G/A non_coding_transcript_variant
rs1001066696 -- 35,731,851(-) C/A intron_variant
rs1001563987 -- 35,736,182(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC285847 Gene

Variant ID Type Subtype PubMed ID
nsv821646 CNV loss 15273396
nsv7890 CNV gain 18304495
nsv602924 CNV gain 21841781
nsv428143 CNV gain 18775914
nsv1028947 CNV gain 25217958
esv3890842 CNV gain 25118596
esv3608690 CNV gain 21293372
esv3608689 CNV gain 21293372
esv2759420 CNV gain 17122850

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC285847 Gene

Disorders for LOC285847 Gene

Additional Disease Information for LOC285847

No disorders were found for LOC285847 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC285847 Gene

Publications for LOC285847 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC285847 Gene

Sources for LOC285847 Gene

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