Aliases for LOC285847 Gene

Data sources for LOC285847 Gene:

RNA type for LOC285847 Gene

lncRNA

Aliases for LOC285847 Gene

External Ids for LOC285847 Gene

Previous GeneCards Identifiers for LOC285847 Gene

  • GC06M035683
  • GC06U900484
  • GC06M036053
  • GC06M036090
  • GC06M038960
  • GC06M039651
  • GC06M039954
  • GC06M041291
  • GC06M036302
  • GC06M036669
  • GC06M037022
  • GC06M037372
  • GC06M037728
  • GC06M038074
  • GC06M038464
  • GC06M038809
  • GC06M042218
  • GC06M043470

Summaries for LOC285847 Gene

GeneCards Summary for LOC285847 Gene

LOC285847 (Uncharacterized LOC285847) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC285847 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC285847 Gene

Genomics for LOC285847 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC285847 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J035739 Enhancer 1.1 ENCODE dbSUPER 250.7 -0.8 -762 0.2 ZNF654 MYC ZNF600 KLF9 CEBPA ATF3 NFIC YY1 MXD4 CTCF ENSG00000232909 LOC285847 piR-56580-039 ARMC12 CLPSL2
GH06J035736 Enhancer 0.9 ENCODE dbSUPER 250.7 +0.5 488 0.2 ZNF207 ZNF654 ZNF580 ZNF10 ZBTB10 CTCF REST DEK TRIM22 RAD21 ENSG00000232909 HSALNG0049715 LOC285847 ARMC12 CLPSL2
GH06J035734 Enhancer 0.7 dbSUPER 250.7 +1.4 1393 1.4 ZNF207 ZNF10 KLF9 GABPB1 SKIL CTCF BATF ELF1 RB1 IKZF5 ARMC12 ENSG00000232909 HSALNG0049714 HSALNG0049715 LOC285847 ENSG00000228559 CLPSL2
GH06J035737 Promoter/Enhancer 0.5 EPDnew dbSUPER 250.7 -0.1 -98 0.1 ARMC12 ENSG00000232909 HSALNG0049715 LOC285847 ENSG00000228559 piR-56580-039 CLPSL2
GH06J035723 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +7.9 7850 10.8 SP1 ZNF207 NCOR1 MYC IKZF1 ZNF600 SSRP1 ZNF580 ZNF592 ZMYM3 ARMC12 FKBP5 HSALNG0049712 TAF11 SRSF3 ZNF76 ENSG00000272374 RPS15AP19 RPL10A BRPF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC285847 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC285847 gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • HNF-3beta
  • LCR-F1
  • SEF-1 (1)
  • TBP

Genomic Locations for LOC285847 Gene

Latest Assembly
chr6:35,726,762-35,736,947
(GRCh38/hg38)
Size:
10,186 bases
Orientation:
Minus strand

Previous Assembly
chr6:35,694,539-35,704,724
(GRCh37/hg19 by Entrez Gene)
Size:
10,186 bases
Orientation:
Minus strand

Genomic View for LOC285847 Gene

Genes around LOC285847 on UCSC Golden Path with GeneCards custom track
LOC285847 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC285847 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC285847 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC285847 Gene

Proteins for LOC285847 Gene

Post-translational modifications for LOC285847 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC285847 Gene

Domains & Families for LOC285847 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC285847 Gene

Function for LOC285847 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC285847 Gene

Localization for LOC285847 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC285847 Gene

Pathways & Interactions for LOC285847 Gene

PathCards logo

SuperPathways for LOC285847 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC285847 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC285847 Gene

Drugs & Compounds for LOC285847 Gene

No Compound Related Data Available

Transcripts for LOC285847 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC285847 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075CB5B_9606 lncRNA 1732 1

RefSeq: NR_027117,

URS00009AEAC7_9606 lncRNA 669 2

LncBook: HSALNT0105505,

NONCODE: NONHSAT209044.1,

URS0001BF322F_9606 lncRNA 1732 1

LncBook: HSALNT0105501,

URS0001BEBCDE_9606 lncRNA 669 1

LncBook: HSALNT0105505,

URS0001BF7251_9606 lncRNA 478 1

LncBook: HSALNT0105502,

LOC285847 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC285847 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC285847 Gene

No ASD Table

Relevant External Links for LOC285847 Gene

GeneLoc Exon Structure for
LOC285847

Expression for LOC285847 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC285847 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC285847

genes like me logo Genes that share expression patterns with LOC285847: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC285847 Gene

Orthologs for LOC285847 Gene

No data available for Orthologs and Evolution for LOC285847 Gene

Paralogs for LOC285847 Gene

No data available for Paralogs for LOC285847 Gene

Variants for LOC285847 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC285847 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC285847 Gene

Variant ID Type Subtype PubMed ID
esv2759420 CNV gain 17122850
esv3608689 CNV gain 21293372
esv3608690 CNV gain 21293372
esv3890842 CNV gain 25118596
nsv1028947 CNV gain 25217958
nsv428143 CNV gain 18775914
nsv602924 CNV gain 21841781
nsv7890 CNV gain 18304495
nsv821646 CNV loss 15273396

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC285847 Gene

Disorders for LOC285847 Gene

No disorders were found for LOC285847 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC285847 Gene

Publications for LOC285847 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC285847 Gene

Products for LOC285847 Gene

Sources for LOC285847 Gene