Aliases for LOC285593 Gene

Subcategory (RNA class) for LOC285593 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC285593 Gene

  • Uncharacterized LOC285593 3
  • NONHSAG042270 94
  • HSALNG0046701 169
  • CTB-33O18.3 3
  • Lnc-CPEB4-4 170

External Ids for LOC285593 Gene

Previous GeneCards Identifiers for LOC285593 Gene

  • GC05P173708
  • GC05P172942
  • GC05U900414
  • GC05P173006

Summaries for LOC285593 Gene

GeneCards Summary for LOC285593 Gene

LOC285593 (Uncharacterized LOC285593) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC285593 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC285593 Gene

Genomics for LOC285593 Gene

GeneHancer (GH) Regulatory Elements for LOC285593 Gene

Promoters and enhancers for LOC285593 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J173581 Enhancer 0.7 ENCODE 0.6 +2.2 2209 0.1 CTCF MYC L3MBTL2 MAX EGR1 KLF14 PKNOX1 REST ZBTB33 TRIM22 BOD1 ENSG00000253955 LOC285593 LOC105377735
GH05J173582 Enhancer 0.6 Ensembl ENCODE 0.6 +3.2 3156 1.2 L3MBTL2 CTCF POLR2A BOD1 ENSG00000253955 LOC285593 LOC105377735
GH05J173583 Enhancer 0.2 ENCODE 0.6 +3.9 3859 0.2 BOD1 LOC285593 LOC105377735 ENSG00000253955
GH05J173584 Enhancer 0.2 Ensembl 0.6 +4.4 4366 0.8 LOC105377735 BOD1 ENSG00000253955 LOC285593
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC285593 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC285593 gene promoter:
  • CUTL1
  • E47
  • HOXA5
  • IRF-1
  • Tal-1

Genomic Locations for LOC285593 Gene

Genomic Locations for LOC285593 Gene
chr5:173,579,634-173,585,068
(GRCh38/hg38)
Size:
5,435 bases
Orientation:
Plus strand
chr5:173,006,646-173,012,075
(GRCh37/hg19)
Size:
5,430 bases
Orientation:
Plus strand

Genomic View for LOC285593 Gene

Genes around LOC285593 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC285593 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC285593 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC285593 Gene

Proteins for LOC285593 Gene

Post-translational modifications for LOC285593 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC285593 Gene

Domains & Families for LOC285593 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC285593 Gene

Function for LOC285593 Gene

Phenotypes From GWAS Catalog for LOC285593 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC285593 Gene

Localization for LOC285593 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC285593 Gene

Pathways & Interactions for LOC285593 Gene

PathCards logo

SuperPathways for LOC285593 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC285593 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC285593 Gene

Drugs & Compounds for LOC285593 Gene

No Compound Related Data Available

Transcripts for LOC285593 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC285593 Gene

No ASD Table

Relevant External Links for LOC285593 Gene

GeneLoc Exon Structure for
LOC285593

Expression for LOC285593 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC285593 Gene

mRNA differential expression in normal tissues according to GTEx for LOC285593 Gene

This gene is overexpressed in Testis (x8.1).

SOURCE GeneReport for Unigene cluster for LOC285593 Gene:

Hs.409730
genes like me logo Genes that share expression patterns with LOC285593: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC285593 Gene

Orthologs for LOC285593 Gene

No data available for Orthologs and Evolution for LOC285593 Gene

Paralogs for LOC285593 Gene

No data available for Paralogs for LOC285593 Gene

Variants for LOC285593 Gene

Sequence variations from dbSNP and Humsavar for LOC285593 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000156206 -- 173,580,284(+) A/C non_coding_transcript_variant
rs1000649779 -- 173,582,642(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000714344 -- 173,581,288(+) G/A intron_variant, non_coding_transcript_variant
rs1001606851 -- 173,584,463(+) GTCCACACAGATTTAGGT/GT genic_downstream_transcript_variant, non_coding_transcript_variant
rs1001654527 -- 173,580,790(+) A/G intron_variant, non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC285593 Gene

Variant ID Type Subtype PubMed ID
esv34083 CNV loss 18971310
nsv5133 CNV insertion 18451855
nsv600298 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC285593 Gene

Disorders for LOC285593 Gene

No disorders were found for LOC285593 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC285593 Gene

Publications for LOC285593 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC285593 Gene

Products for LOC285593 Gene

Sources for LOC285593 Gene