Aliases for LOC285500 Gene

Data sources for LOC285500 Gene:

RNA type for LOC285500 Gene

ncRNA

Aliases for LOC285500 Gene

External Ids for LOC285500 Gene

Previous GeneCards Identifiers for LOC285500 Gene

  • GC04P179064
  • GC04U900356
  • GC04P178889

Summaries for LOC285500 Gene

GeneCards Summary for LOC285500 Gene

LOC285500 (Uncharacterized LOC285500) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC285500 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC285500 Gene

Genomics for LOC285500 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC285500 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J177440 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.4 -410 3 BCLAF1 SP1 ZNF207 MYC ZNF600 ZNF580 ZMYM3 POLR2A CEBPA ZSCAN16 AGA ENSG00000250131 LOC285500 HSALNG0038750 NEIL3
GH04J177444 Promoter/Enhancer 0.8 Ensembl ENCODE 0.7 +3.3 3301 2.4 POLR2A ZFP91 TAF1 ZBTB33 KLF1 HSALNG0038751 AGA ENSG00000249008 ENSG00000250131 LOC285500 RF00001-225 RNA5SP172
GH04J177455 Enhancer 0.7 Ensembl 0.4 +13.2 13200 0.6 NCOR1 NFIC ZIC2 FEZF1 TAF9B TAL1 ZNF843 ZNF146 PRDM6 ZNF318 RF00001-225 RNA5SP172 ENSG00000249008 AGA LOC285500 ENSG00000250131 HSALNG0038751
GH04J177448 Enhancer 0.4 Ensembl 0.4 +6.6 6601 1.4 JUND ZBTB33 POLR2A EP300 ENSG00000249008 AGA HSALNG0038751 ENSG00000250131 RF00001-225 RNA5SP172 LOC285500
GH04J177450 Enhancer 0.3 Ensembl 0.4 +8.2 8201 1.4 ZBTB33 CEBPB ENSG00000249008 AGA ENSG00000250131 RF00001-225 HSALNG0038751 RNA5SP172 LOC285500
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC285500 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC285500 Gene

Latest Assembly
chr4:177,442,500-177,464,921
(GRCh38/hg38)
Size:
22,422 bases
Orientation:
Plus strand

Genomic View for LOC285500 Gene

Genes around LOC285500 on UCSC Golden Path with GeneCards custom track
LOC285500 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC285500 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC285500 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC285500 Gene

Proteins for LOC285500 Gene

Post-translational modifications for LOC285500 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC285500 Gene

Domains & Families for LOC285500 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC285500 Gene

Function for LOC285500 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC285500 Gene

Localization for LOC285500 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC285500 Gene

Pathways & Interactions for LOC285500 Gene

PathCards logo

SuperPathways for LOC285500 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC285500 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC285500 Gene

Drugs & Compounds for LOC285500 Gene

No Compound Related Data Available

Transcripts for LOC285500 Gene

LOC285500 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

mRNA/cDNA for LOC285500 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC285500 Gene

No ASD Table

Relevant External Links for LOC285500 Gene

GeneLoc Exon Structure for
LOC285500

Expression for LOC285500 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC285500

SOURCE GeneReport for Unigene cluster for LOC285500 Gene:

Hs.435077
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC285500 Gene

Orthologs for LOC285500 Gene

No data available for Orthologs and Evolution for LOC285500 Gene

Paralogs for LOC285500 Gene

No data available for Paralogs for LOC285500 Gene

Variants for LOC285500 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC285500 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC285500 Gene

Disorders for LOC285500 Gene

No disorders were found for LOC285500 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC285500 Gene

Publications for LOC285500 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC285500 Gene

Products for LOC285500 Gene

Sources for LOC285500 Gene