Aliases for LOC285191 Gene

Data sources for LOC285191 Gene:

Subcategory (RNA class) for LOC285191 Gene

lncRNA

Aliases for LOC285191 Gene

External Ids for LOC285191 Gene

Previous GeneCards Identifiers for LOC285191 Gene

  • GC02M240692
  • GC02P241646
  • GC02U900587
  • GC02P241275

Summaries for LOC285191 Gene

GeneCards Summary for LOC285191 Gene

LOC285191 (Uncharacterized LOC285191) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC285191 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC285191 Gene

Genomics for LOC285191 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC285191 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J240685 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.6 550 1.5 ZBTB48 CTCF ENSG00000219159 AQP12B LOC285191 AQP12A
GH02J240683 Enhancer 0.3 Ensembl dbSUPER 250.7 -2.0 -1998 1.2 AQP12B LOC285191 ENSG00000219159 AQP12A NONHSAG030991.2 GPR35
GH02J240687 Enhancer 0.3 Ensembl dbSUPER 250.7 +1.8 1803 0.4 ENSG00000219159 LOC285191 AQP12B AQP12A
GH02J240690 Enhancer 0.3 Ensembl dbSUPER 0.7 +4.9 4903 1 AQP12A ENSG00000219159 LOC285191 AQP12B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC285191 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC285191 Gene

Latest Assembly
chr2:240,685,998-240,690,414
(GRCh38/hg38)
Size:
4,417 bases
Orientation:
Plus strand

Previous Assembly
chr2:241,625,751-241,628,539
(GRCh37/hg19 by Entrez Gene)
Size:
2,789 bases
Orientation:
Plus strand

Genomic View for LOC285191 Gene

Genes around LOC285191 on UCSC Golden Path with GeneCards custom track
LOC285191 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC285191 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC285191 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC285191 Gene

Proteins for LOC285191 Gene

Post-translational modifications for LOC285191 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC285191 Gene

Domains & Families for LOC285191 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC285191 Gene

Function for LOC285191 Gene

genes like me logo Genes that share phenotypes with LOC285191: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC285191 Gene

Localization for LOC285191 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC285191 Gene

Pathways & Interactions for LOC285191 Gene

PathCards logo

SuperPathways for LOC285191 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC285191 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC285191 Gene

Drugs & Compounds for LOC285191 Gene

No Compound Related Data Available

Transcripts for LOC285191 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC285191 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC45CC_9606 lncRNA 2106 1

RefSeq: NR_149021,

URS0001BF8EC4_9606 lncRNA 3398 1

LncBook: HSALNT0049812,

URS0001BDBDE0_9606 lncRNA 2105 1

LncBook: HSALNT0049811,

URS0001BE19C3_9606 lncRNA 1167 1

LncBook: HSALNT0049809,

URS0001BE2AA9_9606 lncRNA 410 1

LncBook: HSALNT0049810,

LOC285191 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC285191 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC285191 Gene

No ASD Table

Relevant External Links for LOC285191 Gene

GeneLoc Exon Structure for
LOC285191

Expression for LOC285191 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC285191 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC285191

SOURCE GeneReport for Unigene cluster for LOC285191 Gene:

Hs.729906
genes like me logo Genes that share expression patterns with LOC285191: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC285191 Gene

Orthologs for LOC285191 Gene

No data available for Orthologs and Evolution for LOC285191 Gene

Paralogs for LOC285191 Gene

No data available for Paralogs for LOC285191 Gene

Variants for LOC285191 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC285191 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC285191 Gene

Disorders for LOC285191 Gene

No disorders were found for LOC285191 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC285191 Gene

Publications for LOC285191 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC285191 Gene

Products for LOC285191 Gene

Sources for LOC285191 Gene