Aliases for LOC285000 Gene

Subcategory (RNA class) for LOC285000 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC285000 Gene

  • Uncharacterized LOC285000 3
  • NONHSAG028821 92
  • HSALNG0017590 167
  • Lnc-FHL2-1 168

External Ids for LOC285000 Gene

Previous GeneCards Identifiers for LOC285000 Gene

  • GC02M104662
  • GC02M105814
  • GC02U900498
  • GC02M105830
  • GC02M106212

Summaries for LOC285000 Gene

GeneCards Summary for LOC285000 Gene

LOC285000 (Uncharacterized LOC285000) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC285000 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC285000 Gene

Genomics for LOC285000 Gene

GeneHancer (GH) Regulatory Elements for LOC285000 Gene

Promoters and enhancers for LOC285000 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J105609 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 500.7 -0.9 -851 4.4 EP300 NR2F1 NR2F6 ZBTB33 GABPB1 JUND NR2C1 FOS FOXA2 POLR2A ENSG00000287036 LOC285000 lnc-NCK2-2 piR-50444-259 ENSG00000287308
GH02J105610 Enhancer 0.2 Ensembl 500.7 +1.5 1458 0.2 ENSG00000287036 LOC285000 lnc-NCK2-2 ENSG00000287308
GH02J105600 Enhancer 1.1 Ensembl ENCODE 0.4 +9.1 9092 1.9 BCLAF1 GTF2E2 ZBTB5 ZBTB11 AFF1 TARDBP REST DNMT1 HES1 NR3C1 ENSG00000287308 ECRG4 POU3F3 ENSG00000235522 ENSG00000287036 LOC285000 lnc-NCK2-2
GH02J105592 Enhancer 0.7 Ensembl ENCODE 0.4 +17.3 17258 1.8 ZNF316 CTCF RAD21 SMARCA4 ESRRA ARID1B FOS EGR1 CBFA2T3 STAT3 ECRG4 piR-59169 ENSG00000287308 LOC285000
GH02J105595 Enhancer 0.6 Ensembl 0.4 +12.1 12140 2.4 RBM25 CREB1 BCOR ZNF589 TFDP1 ATF2 ZMYM3 ZFP36 SPI1 ZFX ECRG4 ENSG00000287308 piR-59169 LOC285000
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC285000 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC285000 Gene

Genomic Locations for LOC285000 Gene
chr2:105,593,097-105,610,559
(GRCh38/hg38)
Size:
17,463 bases
Orientation:
Minus strand
chr2:106,209,554-106,227,016
(GRCh37/hg19)
Size:
17,463 bases
Orientation:
Minus strand

Genomic View for LOC285000 Gene

Genes around LOC285000 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC285000 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC285000 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC285000 Gene

Proteins for LOC285000 Gene

Post-translational modifications for LOC285000 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC285000 Gene

Domains & Families for LOC285000 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC285000 Gene

Function for LOC285000 Gene

Phenotypes From GWAS Catalog for LOC285000 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC285000 Gene

Localization for LOC285000 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC285000 Gene

Pathways & Interactions for LOC285000 Gene

PathCards logo

SuperPathways for LOC285000 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC285000 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC285000 Gene

Drugs & Compounds for LOC285000 Gene

No Compound Related Data Available

Transcripts for LOC285000 Gene

mRNA/cDNA for LOC285000 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC285000 Gene

No ASD Table

Relevant External Links for LOC285000 Gene

GeneLoc Exon Structure for
LOC285000

Expression for LOC285000 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC285000

SOURCE GeneReport for Unigene cluster for LOC285000 Gene:

Hs.737917
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC285000 Gene

Orthologs for LOC285000 Gene

No data available for Orthologs and Evolution for LOC285000 Gene

Paralogs for LOC285000 Gene

No data available for Paralogs for LOC285000 Gene

Variants for LOC285000 Gene

Additional dbSNP identifiers (rs#s) for LOC285000 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC285000 Gene

Variant ID Type Subtype PubMed ID
esv3307459 CNV mobile element insertion 20981092
esv3360720 CNV insertion 20981092
nsv516491 CNV loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC285000 Gene

Disorders for LOC285000 Gene

No disorders were found for LOC285000 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC285000 Gene

Publications for LOC285000 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC285000 Gene

Products for LOC285000 Gene

Sources for LOC285000 Gene