Aliases for LOC284620 Gene

Aliases for LOC284620 Gene

  • Claudin 6 Pseudogene 3

External Ids for LOC284620 Gene

Previous GeneCards Identifiers for LOC284620 Gene

  • GC01M151300
  • GC01M152338
  • GC01M152777
  • GC01M152373
  • GC01M153826
  • GC01M155561

Summaries for LOC284620 Gene

GeneCards Summary for LOC284620 Gene

LOC284620 (Claudin 6 Pseudogene) is a Pseudogene.

Additional gene information for LOC284620 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC284620 Gene

Genomics for LOC284620 Gene

GeneHancer (GH) Regulatory Elements for LOC284620 Gene

Promoters and enhancers for LOC284620 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J155591 Enhancer 0.8 Ensembl 500.7 -0.4 -417 1.1 CTCF REST RAD21 TRIM22 SMC3 RBM25 ARNT ZNF384 ZNF524 KLF13 ENSG00000223503 LOC284620 GBA DAP3P1 lnc-MSTO1-3 piR-42907-005 ASH1L-AS1
GH01J155598 Enhancer 1 FANTOM5 ENCODE CraniofacialAtlas 0.4 -7.6 -7602 1 EP300 ZNF585B SMC3 ZBTB17 TCF7L2 CTCF ZFP91 ZNF384 DPF2 MEIS2 piR-40154-012 piR-42907-005 piR-52261-019 ASH1L ASH1L-AS1 RUSC1 RUSC1-AS1 RNU6-1297P FDPS MIR555
GH01J155597 Enhancer 0.3 Ensembl 0.4 -5.4 -5383 0.2 TOE1 ZNF121 piR-42907-005 LOC284620 DAP3P1 lnc-MSTO1-3 ASH1L-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC284620 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC284620 gene promoter:
  • E47
  • HOXA9
  • HOXA9B
  • IRF-2
  • Meis-1
  • Meis-1a
  • POU2F1
  • POU2F1a
  • RSRFC4
  • Tal-1

Genomic Locations for LOC284620 Gene

Genomic Locations for LOC284620 Gene
chr1:155,590,404-155,591,318
(GRCh38/hg38)
Size:
915 bases
Orientation:
Minus strand
chr1:155,560,392-155,561,053
(GRCh37/hg19)
Size:
662 bases
Orientation:
Minus strand

Genomic View for LOC284620 Gene

Genes around LOC284620 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC284620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284620 Gene

Proteins for LOC284620 Gene

Post-translational modifications for LOC284620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284620 Gene

Domains & Families for LOC284620 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC284620 Gene

Function for LOC284620 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284620 Gene

Localization for LOC284620 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC284620 Gene

Pathways & Interactions for LOC284620 Gene

PathCards logo

SuperPathways for LOC284620 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC284620 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC284620 Gene

Drugs & Compounds for LOC284620 Gene

No Compound Related Data Available

Transcripts for LOC284620 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284620 Gene

No ASD Table

Relevant External Links for LOC284620 Gene

GeneLoc Exon Structure for
LOC284620

No data available for mRNA/cDNA for LOC284620 Gene

Expression for LOC284620 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC284620 Gene

mRNA differential expression in normal tissues according to GTEx for LOC284620 Gene

This gene is overexpressed in Testis (x14.0).
genes like me logo Genes that share expression patterns with LOC284620: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284620 Gene

Orthologs for LOC284620 Gene

No data available for Orthologs and Evolution for LOC284620 Gene

Paralogs for LOC284620 Gene

No data available for Paralogs for LOC284620 Gene

Variants for LOC284620 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC284620 Gene

Disorders for LOC284620 Gene

No disorders were found for LOC284620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC284620 Gene

Publications for LOC284620 Gene

No publications were found for LOC284620 Gene.

No data available for Mastermind for LOC284620 Gene

Products for LOC284620 Gene

Sources for LOC284620 Gene