Aliases for LOC284581 Gene

Subcategory (RNA class) for LOC284581 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC284581 Gene

  • Uncharacterized LOC284581 3
  • HSALNG0009985 169
  • NONHSAG004074 94
  • Lnc-RHEX-8 170

External Ids for LOC284581 Gene

Previous GeneCards Identifiers for LOC284581 Gene

  • GC01P201321
  • GC01P202221
  • GC01U900987
  • GC01P203037
  • GC01P202590

Summaries for LOC284581 Gene

GeneCards Summary for LOC284581 Gene

LOC284581 (Uncharacterized LOC284581) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC284581 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC284581 Gene

Genomics for LOC284581 Gene

GeneHancer (GH) Regulatory Elements for LOC284581 Gene

Promoters and enhancers for LOC284581 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J205859 Enhancer 0.4 Ensembl 0.6 -3.3 -3269 0.4 RAD21 PRDM10 CTCF SLC41A1 NUCKS1 RAB29 LOC284581 PM20D1 ENSG00000286619
GH01J205889 Enhancer 0.7 Ensembl ENCODE 0.3 +28.0 27959 2.5 JUN RCOR1 JUND SOX6 SP1 FOSL2 FOS TAL1 PM20D1 RAB29 piR-38129-010 piR-34354-001 LOC284581 ENSG00000286619
GH01J205852 Enhancer 0.5 ENCODE 0.4 -9.9 -9911 0.1 CREB1 CTBP1 CUX1 RCOR1 SMARCE1 SLC41A1 RAB29 PM20D1 LOC284581 ENSG00000286619 lnc-RHEX-7
GH01J205858 Enhancer 0.3 ENCODE 0.6 -3.6 -3581 0 PRDM10 SLC41A1 NUCKS1 RAB29 LOC284581 PM20D1 ENSG00000286619
GH01J205857 Enhancer 0.2 Ensembl 0.6 -4.1 -4079 0.8 SLC41A1 ENSG00000227687 SLC26A9 NUCKS1 RAB29 LOC284581 PM20D1 lnc-RHEX-7 ENSG00000286619
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC284581 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC284581 Gene

Genomic Locations for LOC284581 Gene
chr1:205,862,079-205,896,437
(GRCh38/hg38)
Size:
34,359 bases
Orientation:
Plus strand

Genomic View for LOC284581 Gene

Genes around LOC284581 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC284581 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284581 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284581 Gene

Proteins for LOC284581 Gene

Post-translational modifications for LOC284581 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284581 Gene

Domains & Families for LOC284581 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC284581 Gene

Function for LOC284581 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284581 Gene

Localization for LOC284581 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC284581 Gene

Pathways & Interactions for LOC284581 Gene

PathCards logo

SuperPathways for LOC284581 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC284581 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC284581 Gene

Drugs & Compounds for LOC284581 Gene

No Compound Related Data Available

Transcripts for LOC284581 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284581 Gene

No ASD Table

Relevant External Links for LOC284581 Gene

GeneLoc Exon Structure for
LOC284581

Expression for LOC284581 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284581 Gene

Orthologs for LOC284581 Gene

No data available for Orthologs and Evolution for LOC284581 Gene

Paralogs for LOC284581 Gene

No data available for Paralogs for LOC284581 Gene

Variants for LOC284581 Gene

Sequence variations from dbSNP and Humsavar for LOC284581 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000122110 -- 205,875,079(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000187783 -- 205,875,883(+) G/T genic_upstream_transcript_variant, intron_variant
rs1000261901 -- 205,880,240(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000380508 -- 205,885,920(+) G/C genic_upstream_transcript_variant, intron_variant
rs1000385369 -- 205,895,173(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC284581 Gene

Variant ID Type Subtype PubMed ID
dgv74e214 CNV gain 21293372
esv2249382 CNV deletion 18987734
esv2721962 CNV deletion 23290073
esv275594 CNV gain+loss 21479260
esv3545544 CNV deletion 23714750
nsv832392 CNV gain 17160897
nsv946607 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC284581 Gene

Disorders for LOC284581 Gene

No disorders were found for LOC284581 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC284581 Gene

Publications for LOC284581 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC284581 Gene

Products for LOC284581 Gene

Sources for LOC284581 Gene