Aliases for LOC284454 Gene

Subcategory (RNA class) for LOC284454 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC284454 Gene

  • Uncharacterized LOC284454 3
  • Lnc-C19orf57-6 170
  • NONHSAG024933 94
  • HSALNG0124249 169
  • CTD-3252C9.4 3

External Ids for LOC284454 Gene

Previous GeneCards Identifiers for LOC284454 Gene

  • GC19M014312
  • GC19M013790
  • GC19U900384
  • GC19M013945
  • GC19M013859
  • GC19M013864
  • GC19M013934
  • GC19M013943
  • GC19M013869
  • GC19M013875
  • GC19M013880
  • GC19M013891
  • GC19M013898
  • GC19M013908
  • GC19M013915
  • GC19M013928

Summaries for LOC284454 Gene

GeneCards Summary for LOC284454 Gene

LOC284454 (Uncharacterized LOC284454) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LOC284454 Gene

Additional gene information for LOC284454 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC284454 Gene

Genomics for LOC284454 Gene

GeneHancer (GH) Regulatory Elements for LOC284454 Gene

Promoters and enhancers for LOC284454 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J013833 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.6 -1648 23.2 E2F8 GTF3C2 ZNF785 SIN3A SP1 ZBTB40 CTCF SREBF1 LCORL ZBTB6 ENSG00000267519 LOC284454 lnc-ZSWIM4-1 CCDC130 ZNF333 MRI1 TRMT1 DCAF15 DDX39A RFX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC284454 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC284454 Gene

Genomic Locations for LOC284454 Gene
chr19:13,834,516-13,842,918
(GRCh38/hg38)
Size:
8,403 bases
Orientation:
Minus strand
chr19:13,945,330-13,947,103
(GRCh37/hg19)
Size:
1,774 bases
Orientation:
Minus strand

Genomic View for LOC284454 Gene

Genes around LOC284454 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC284454 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284454 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284454 Gene

Proteins for LOC284454 Gene

Post-translational modifications for LOC284454 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284454 Gene

Domains & Families for LOC284454 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC284454 Gene

Function for LOC284454 Gene

Phenotypes From GWAS Catalog for LOC284454 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284454 Gene

Localization for LOC284454 Gene

Gene Ontology (GO) - Cellular Components for LOC284454 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016442 RISC complex IEA --
genes like me logo Genes that share ontologies with LOC284454: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LOC284454 Gene

Pathways & Interactions for LOC284454 Gene

PathCards logo

SuperPathways for LOC284454 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC284454 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IEA --
genes like me logo Genes that share ontologies with LOC284454: view

No data available for Pathways by source and SIGNOR curated interactions for LOC284454 Gene

Drugs & Compounds for LOC284454 Gene

No Compound Related Data Available

Transcripts for LOC284454 Gene

mRNA/cDNA for LOC284454 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(8) RNACentral transcripts :
(2) NONCODE transcripts :
(7) LNCipedia transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284454 Gene

No ASD Table

Relevant External Links for LOC284454 Gene

GeneLoc Exon Structure for
LOC284454

Expression for LOC284454 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC284454 Gene

SOURCE GeneReport for Unigene cluster for LOC284454 Gene:

Hs.436426
genes like me logo Genes that share expression patterns with LOC284454: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284454 Gene

Orthologs for LOC284454 Gene

No data available for Orthologs and Evolution for LOC284454 Gene

Paralogs for LOC284454 Gene

No data available for Paralogs for LOC284454 Gene

Variants for LOC284454 Gene

Sequence variations from dbSNP and Humsavar for LOC284454 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000351041 -- 13,838,694(-) C/A non_coding_transcript_variant
rs1000415628 -- 13,843,447(-) C/T upstream_transcript_variant
rs1000538048 -- 13,837,030(-) A/G non_coding_transcript_variant
rs1001463246 -- 13,838,118(-) G/C non_coding_transcript_variant
rs1001532991 -- 13,842,568(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC284454 Gene

Variant ID Type Subtype PubMed ID
nsv833757 CNV loss 17160897
nsv953979 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC284454 Gene

Disorders for LOC284454 Gene

No disorders were found for LOC284454 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC284454 Gene

Publications for LOC284454 Gene

  1. Long non-coding RNA LOC284454 promotes migration and invasion of nasopharyngeal carcinoma via modulating the Rho/Rac signaling pathway. (PMID: 30380023) Fan C … Zeng Z (Carcinogenesis 2019) 3 56
  2. DDX5/p68 associated lncRNA LOC284454 is differentially expressed in human cancers and modulates gene expression. (PMID: 29227193) Das M … Satyanarayana Rao MR (RNA biology 2018) 3 56
  3. An integrated expression atlas of miRNAs and their promoters in human and mouse. (PMID: 28829439) de Rie D … de Hoon MJL (Nature biotechnology 2017) 3 56

No data available for External Links for LOC284454 Gene

Products for LOC284454 Gene

Sources for LOC284454 Gene