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Aliases for LOC284395 Gene

Subcategory (RNA class) for LOC284395 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC284395 Gene

  • Uncharacterized LOC284395 3
  • Novel Transcript 5
  • AC011474.1 5

External Ids for LOC284395 Gene

Previous GeneCards Identifiers for LOC284395 Gene

  • GC19M030226
  • GC19M034453
  • GC19U900287
  • GC19M034469
  • GC19M034595
  • GC19M029903
  • GC19M029779

Summaries for LOC284395 Gene

GeneCards Summary for LOC284395 Gene

LOC284395 (Uncharacterized LOC284395) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC284395 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC284395 Gene

Genomics for LOC284395 Gene

GeneHancer (GH) Regulatory Elements for LOC284395 Gene

Promoters and enhancers for LOC284395 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J029525 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 +0.4 414 0.5 ZSCAN21 ZBTB7A SP7 GLIS2 ZBTB8A ZNF600 PRDM10 ZIC2 ZSCAN4 ZEB2 VSTM2B LOC284395 ENSG00000266248 RPL9P32 ENSG00000279387
GH19J029526 Promoter/Enhancer 1.3 Ensembl dbSUPER 600.7 +1.0 951 0.4 ZSCAN21 SP7 KLF14 GLIS2 ZBTB8A ZNF600 ZIC2 ZEB2 ZNF692 ZNF341 LOC284395 VSTM2B RPL9P32 ENSG00000266248 ENSG00000279387
GH19J029527 Promoter/Enhancer 1.2 Ensembl dbSUPER 600.7 -0.2 -249 0.4 ZBTB7A ZBTB8A ZIC2 ZSCAN4 KLF7 ZNF501 ZNF341 ZNF561 SCRT2 ZBTB20 ENSG00000266248 LOC284395 VSTM2B
GH19J029524 Enhancer 0.6 ENCODE dbSUPER 600.7 +1.4 1363 0.2 ZNF335 CTCF LOC284395 VSTM2B ENSG00000266248 ENSG00000279387
GH19J029404 Enhancer 0.8 Ensembl ENCODE 7.7 +120.6 120634 1.8 ZBTB33 ZNF600 TARDBP CTBP1 KLF4 ZNF217 DPF2 SIN3A GATA3 ZNF687 LOC284395 GC19M029412 PIR46863
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC284395 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC284395 gene promoter:
  • FOXI1
  • Gfi-1
  • HFH-3
  • HNF-4alpha1
  • HNF-4alpha2
  • LCR-F1
  • MyoD
  • POU3F1
  • RORalpha2
  • SEF-1 (1)

Genomic Locations for LOC284395 Gene

Genomic Locations for LOC284395 Gene
chr19:29,287,011-29,525,752
(GRCh38/hg38)
Size:
238,742 bases
Orientation:
Minus strand
chr19:29,777,918-30,016,659
(GRCh37/hg19)
Size:
238,742 bases
Orientation:
Minus strand

Genomic View for LOC284395 Gene

Genes around LOC284395 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC284395 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284395 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284395 Gene

Proteins for LOC284395 Gene

Post-translational modifications for LOC284395 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284395 Gene

Domains & Families for LOC284395 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC284395 Gene

Function for LOC284395 Gene

Phenotypes From GWAS Catalog for LOC284395 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284395 Gene

Localization for LOC284395 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC284395 Gene

Pathways & Interactions for LOC284395 Gene

PathCards logo

SuperPathways for LOC284395 Gene

No Data Available

Interacting Proteins for LOC284395 Gene

Gene Ontology (GO) - Biological Process for LOC284395 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC284395 Gene

Drugs & Compounds for LOC284395 Gene

No Compound Related Data Available

Transcripts for LOC284395 Gene

mRNA/cDNA for LOC284395 Gene

(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC284395 Gene

Uncharacterized LOC284395:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284395 Gene

No ASD Table

Relevant External Links for LOC284395 Gene

GeneLoc Exon Structure for
LOC284395

Expression for LOC284395 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC284395 Gene

mRNA differential expression in normal tissues according to GTEx for LOC284395 Gene

This gene is overexpressed in Brain - Amygdala (x6.0), Brain - Cortex (x5.9), Brain - Nucleus accumbens (basal ganglia) (x5.8), Brain - Anterior cingulate cortex (BA24) (x5.4), Brain - Putamen (basal ganglia) (x4.6), Brain - Frontal Cortex (BA9) (x4.4), and Brain - Caudate (basal ganglia) (x4.0).

SOURCE GeneReport for Unigene cluster for LOC284395 Gene:

Hs.631601
genes like me logo Genes that share expression patterns with LOC284395: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284395 Gene

Orthologs for LOC284395 Gene

Evolution for LOC284395 Gene

ENSEMBL:
Gene Tree for LOC284395 (if available)
TreeFam:
Gene Tree for LOC284395 (if available)

No data available for Orthologs for LOC284395 Gene

Paralogs for LOC284395 Gene

No data available for Paralogs for LOC284395 Gene

Variants for LOC284395 Gene

Sequence variations from dbSNP and Humsavar for LOC284395 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000008095 -- 29,294,351(-) A/G intron_variant
rs1000011240 -- 29,417,110(-) AGAGAG/AGAG intron_variant
rs1000012185 -- 29,459,188(-) A/G intron_variant
rs1000017287 -- 29,396,079(-) T/C intron_variant
rs1000022090 -- 29,347,902(-) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC284395 Gene

Variant ID Type Subtype PubMed ID
dgv1761n106 CNV deletion 24896259
dgv517e201 CNV deletion 23290073
dgv56n16 CNV deletion 17901297
dgv6387n54 CNV gain 21841781
dgv6388n54 CNV gain 21841781
dgv6389n54 CNV gain 21841781
dgv6390n54 CNV loss 21841781
dgv6391n54 CNV gain 21841781
dgv6392n54 CNV gain+loss 21841781
dgv6393n54 CNV loss 21841781
esv1010496 CNV deletion 20482838
esv1341466 CNV deletion 17803354
esv2019824 CNV deletion 18987734
esv2281219 CNV deletion 18987734
esv23059 CNV gain 19812545
esv2387608 CNV deletion 18987734
esv2449741 CNV deletion 19546169
esv2560996 CNV loss 19546169
esv2666594 CNV deletion 23128226
esv2671347 CNV deletion 23128226
esv2675361 CNV deletion 23128226
esv2718406 CNV deletion 23290073
esv2718408 CNV deletion 23290073
esv2718409 CNV deletion 23290073
esv2718410 CNV deletion 23290073
esv2718411 CNV deletion 23290073
esv2718413 CNV deletion 23290073
esv2718415 CNV deletion 23290073
esv2718416 CNV deletion 23290073
esv2718417 CNV deletion 23290073
esv2742782 CNV deletion 23290073
esv2763202 CNV loss 21179565
esv3091568 CNV deletion 24192839
esv3556261 CNV deletion 23714750
esv3574408 CNV gain 25503493
esv3644120 CNV loss 21293372
esv3644121 CNV gain 21293372
esv3644124 CNV loss 21293372
esv3644125 CNV loss 21293372
esv5060 CNV loss 18987735
esv5350 CNV loss 18987735
esv9272 CNV loss 19470904
nsv1055462 CNV gain 25217958
nsv1055695 CNV gain 25217958
nsv1061604 CNV loss 25217958
nsv1071525 CNV deletion 25765185
nsv1071929 CNV deletion 25765185
nsv1112362 CNV deletion 24896259
nsv1121974 CNV deletion 24896259
nsv1125467 CNV deletion 24896259
nsv1138693 CNV deletion 24896259
nsv1139698 CNV duplication 24896259
nsv1144824 CNV deletion 24896259
nsv1148229 CNV deletion 26484159
nsv2453 CNV insertion 18451855
nsv2455 CNV deletion 18451855
nsv512576 CNV loss 21212237
nsv513523 CNV insertion 21212237
nsv518118 CNV loss 19592680
nsv522565 CNV loss 19592680
nsv579240 CNV gain 21841781
nsv579241 CNV gain 21841781
nsv579245 CNV gain+loss 21841781
nsv579251 CNV loss 21841781
nsv579275 CNV loss 21841781
nsv833798 CNV loss 17160897
nsv953268 CNV deletion 24416366
nsv956580 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC284395 Gene

Disorders for LOC284395 Gene

Additional Disease Information for LOC284395

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for LOC284395 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC284395 Gene

Publications for LOC284395 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 58
  2. Genetic variants associated with disordered eating. (PMID: 23568457) Wade TD … Martin NG (The International journal of eating disorders 2013) 3 58
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC284395 Gene

Products for LOC284395 Gene

Sources for LOC284395 Gene

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