Aliases for LOC284344 Gene

Subcategory (RNA class) for LOC284344 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC284344 Gene

  • Uncharacterized LOC284344 3
  • CEA Cell Adhesion Molecule Pseudogene 10 5
  • NONHSAG025930.2 91
  • HSALNG0126322 164
  • Lnc-PSG9-2 165
  • CEACAMP10 5

External Ids for LOC284344 Gene

Previous GeneCards Identifiers for LOC284344 Gene

  • GC19M044107
  • GC19M048391
  • GC19U900174
  • GC19M043719
  • GC19M043213

Summaries for LOC284344 Gene

GeneCards Summary for LOC284344 Gene

LOC284344 (Uncharacterized LOC284344) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC284344 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC284344 Gene

Genomics for LOC284344 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC284344 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J043264 Enhancer 0.2 Ensembl 600.7 -1.5 -1483 0.2 LOC284344 PSG9 PSG4
GH19J043263 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 0.7 -4.7 -4682 5.8 CREB1 PRDM10 ZNF629 ZNF692 PRDM1 ZSCAN4 PATZ1 ZNF501 ZNF600 ATF7 PSG9 CD177 PSG4 LOC100505715 MEGF8 ZNF428 ZNF575 ENSG00000186019 ZNF404 ZNF576
GH19J043250 Enhancer 0.5 Ensembl 0.4 +11.6 11617 0.4 BCL11A ZBTB48 ZBTB17 ZNF335 FOXA1 ZNF366 GLIS1 ZSCAN21 CEACAMP10 PSG4 ENSG00000231412 LOC284344 PSG9
GH19J043251 Enhancer 0.5 Ensembl 0.4 +11.1 11117 0.2 PRDM10 ZNF174 ZNF335 FOXA1 ZNF366 ZFP37 XRCC1 ZNF227 ZNF45 ZNF225 CIC ZNF155 PSG4 CEACAMP10 LOC284344 PSG9
GH19J043248 Enhancer 0.4 Ensembl 0.4 +13.0 13018 1.2 PRDM1 GLI4 ZNF24 BCL6B CEACAMP10 piR-46002-299 PSG4 ENSG00000231412 LOC284344 PSG9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC284344 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC284344 Gene

Genomic Locations for LOC284344 Gene
chr19:43,211,791-43,262,018
(GRCh38/hg38)
Size:
50,228 bases
Orientation:
Minus strand
chr19:43,715,943-43,752,798
(GRCh37/hg19)
Size:
36,856 bases
Orientation:
Minus strand

Genomic View for LOC284344 Gene

Genes around LOC284344 on UCSC Golden Path with GeneCards custom track
LOC284344 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC284344 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284344 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284344 Gene

Proteins for LOC284344 Gene

Post-translational modifications for LOC284344 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284344 Gene

Domains & Families for LOC284344 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC284344 Gene

Function for LOC284344 Gene

Phenotypes From GWAS Catalog for LOC284344 Gene

Phenotypes for LOC284344 Gene

genes like me logo Genes that share phenotypes with LOC284344: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284344 Gene

Localization for LOC284344 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC284344 Gene

Pathways & Interactions for LOC284344 Gene

PathCards logo

SuperPathways for LOC284344 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC284344 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC284344 Gene

Drugs & Compounds for LOC284344 Gene

No Compound Related Data Available

Transcripts for LOC284344 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC284344 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EBE0_9606 lncRNA 1721 4

RefSeq: NR_033888,

LncBook: HSALNT0260313,

LNCipedia: lnc-PSG9-2:2,

NONCODE: NONHSAT066591.2,

URS00008BFA28_9606 lncRNA 496 2

LNCipedia: lnc-PSG9-2:3,

NONCODE: NONHSAT066593.2,

URS00008B3690_9606 lncRNA 2830 1

LNCipedia: lnc-PSG9-2:1,

URS00009B1B67_9606 lncRNA 1423 1

NONCODE: NONHSAT180448.1,

URS00009BEFCD_9606 lncRNA 943 1

NONCODE: NONHSAT180446.1,

LOC284344 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC284344 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284344 Gene

No ASD Table

Relevant External Links for LOC284344 Gene

GeneLoc Exon Structure for
LOC284344

Expression for LOC284344 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC284344 Gene

mRNA expression in normal human tissues for LOC284344 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC284344

SOURCE GeneReport for Unigene cluster for LOC284344 Gene:

Hs.678987
genes like me logo Genes that share expression patterns with LOC284344: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284344 Gene

Orthologs for LOC284344 Gene

Evolution for LOC284344 Gene

ENSEMBL:
Gene Tree for LOC284344 (if available)
TreeFam:
Gene Tree for LOC284344 (if available)

No data available for Orthologs for LOC284344 Gene

Paralogs for LOC284344 Gene

No data available for Paralogs for LOC284344 Gene

Variants for LOC284344 Gene

Additional dbSNP identifiers (rs#s) for LOC284344 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC284344 Gene

Variant ID Type Subtype PubMed ID
dgv140e55 CNV gain 17911159
dgv141e55 CNV loss 17911159
dgv143n111 CNV deletion 26073780
dgv146n111 CNV deletion 26073780
dgv34e213 CNV loss 24956385
dgv3566n100 CNV gain 25217958
dgv3571n100 CNV loss 25217958
dgv3572n100 CNV gain+loss 25217958
dgv3577n100 CNV gain 25217958
dgv3583n100 CNV loss 25217958
dgv3584n100 CNV gain 25217958
dgv3585n100 CNV loss 25217958
dgv3587n100 CNV gain 25217958
dgv3588n100 CNV gain 25217958
dgv3589n100 CNV loss 25217958
dgv3590n100 CNV gain+loss 25217958
dgv3591n100 CNV loss 25217958
dgv3592n100 CNV loss 25217958
dgv3593n100 CNV gain 25217958
dgv3594n100 CNV gain 25217958
dgv3595n100 CNV gain 25217958
dgv3596n100 CNV gain+loss 25217958
dgv3597n100 CNV loss 25217958
dgv3598n100 CNV loss 25217958
dgv3599n100 CNV loss 25217958
dgv3600n100 CNV loss 25217958
dgv3601n100 CNV gain 25217958
dgv3602n100 CNV loss 25217958
dgv411n27 CNV loss 19166990
dgv523e201 CNV deletion 23290073
dgv524e201 CNV deletion 23290073
dgv525e201 CNV deletion 23290073
dgv590n67 CNV loss 20364138
dgv645e199 CNV deletion 23128226
dgv6466n54 CNV gain 21841781
dgv6467n54 CNV loss 21841781
dgv6471n54 CNV loss 21841781
dgv6485n54 CNV loss 21841781
dgv6488n54 CNV gain 21841781
dgv6494n54 CNV loss 21841781
dgv6495n54 CNV gain+loss 21841781
dgv6496n54 CNV loss 21841781
dgv6497n54 CNV loss 21841781
dgv6498n54 CNV loss 21841781
dgv6499n54 CNV loss 21841781
dgv662e214 CNV loss 21293372
dgv73e203 CNV gain+loss 21179565
esv1002165 CNV gain 20482838
esv22277 CNV gain+loss 19812545
esv2657641 CNV deletion 23128226
esv2659897 CNV deletion 23128226
esv2663048 CNV deletion 23128226
esv2671292 CNV deletion 23128226
esv2675877 CNV deletion 23128226
esv2718603 CNV deletion 23290073
esv2718604 CNV deletion 23290073
esv2718606 CNV deletion 23290073
esv2751795 CNV loss 17911159
esv2758763 CNV gain+loss 17122850
esv33039 CNV gain 17666407
esv34676 CNV loss 17911159
esv3556434 CNV deletion 23714750
esv3556435 CNV deletion 23714750
esv3644411 CNV loss 21293372
esv3644447 CNV loss 21293372
esv3644450 CNV loss 21293372
esv3644453 CNV loss 21293372
esv3644454 CNV gain 21293372
esv3644457 CNV loss 21293372
esv3644458 CNV loss 21293372
esv3893216 CNV gain+loss 25118596
esv3893217 CNV gain 25118596
esv3893219 CNV loss 25118596
esv6630 CNV loss 19470904
esv7692 CNV loss 19470904
nsv1055887 CNV gain+loss 25217958
nsv1057657 CNV gain 25217958
nsv1057682 CNV loss 25217958
nsv1057839 CNV gain 25217958
nsv1059308 CNV gain+loss 25217958
nsv1061699 CNV loss 25217958
nsv1063922 CNV gain+loss 25217958
nsv1064459 CNV loss 25217958
nsv1064717 CNV gain+loss 25217958
nsv1072885 CNV deletion 25765185
nsv1133452 CNV deletion 24896259
nsv1140446 CNV deletion 24896259
nsv1153047 CNV deletion 26484159
nsv2499 CNV deletion 18451855
nsv435702 CNV deletion 17901297
nsv436856 CNV insertion 17901297
nsv437182 CNV loss 16327808
nsv437832 CNV loss 16327808
nsv437833 CNV loss 16327808
nsv442769 CNV loss 18776908
nsv458705 CNV loss 19166990
nsv469787 CNV loss 16826518
nsv470145 CNV loss 18288195
nsv510925 OTHER complex 20534489
nsv516973 CNV gain+loss 19592680
nsv579759 CNV loss 21841781
nsv579779 CNV loss 21841781
nsv579809 CNV gain 21841781
nsv579820 CNV loss 21841781
nsv579821 CNV loss 21841781
nsv579823 CNV loss 21841781
nsv579831 CNV loss 21841781
nsv579832 CNV loss 21841781
nsv817848 CNV loss 17921354
nsv820547 CNV deletion 20802225
nsv963056 CNV duplication 23825009
nsv9730 CNV gain+loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC284344 Gene

Disorders for LOC284344 Gene

No disorders were found for LOC284344 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC284344 Gene

Publications for LOC284344 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC284344 Gene

Products for LOC284344 Gene

Sources for LOC284344 Gene