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Aliases for LOC284241 Gene
Subcategory (RNA class) for LOC284241 Gene
ncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC284241 Gene
External Ids for LOC284241 Gene
- Entrez Gene: 284241
- Ensembl: ENSG00000178412
Additional External Ids for LOC284241 Gene
- Ensembl:
Previous GeneCards Identifiers for LOC284241 Gene
- GC18M077453
Summaries for LOC284241 Gene
GeneCards Summary for LOC284241 Gene
LOC284241 (Uncharacterized LOC284241) is an RNA Gene, and is affiliated with the ncRNA class.
Additional gene information for LOC284241 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC284241 Gene
Genomics for LOC284241 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC284241 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J079677 | Promoter/Enhancer | 2.4 | EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER | 600.7 | -0.3 | -296 | 5.1 | SP1 CREB1 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 SIX5 IKZF1 KDM1A | CTDP1 ENSG00000274828 LOC284241 LOC105376875 lnc-NFATC1-2 ATP9B | |
| GH18J079644 | Enhancer | 1 | ENCODE CraniofacialAtlas | 0.3 | +35.5 | 35484 | 0.3 | BRCA1 CTCF ZNF143 ZIC2 REST RAD21 TCF12 TRIM22 YY1 ZNF561 | NFATC1 HSALNG0122774 ENSG00000274828 LOC284241 CTDP1 | |
| GH18J079657 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | +22.1 | 22144 | 1.2 | CTCF MNT YY1 SIN3A | CTDP1 HSBP1L1 ENSG00000274828 LOC284241 HSALNG0122774 NFATC1 | |
| GH18J079664 | Enhancer | 0.5 | ENCODE | 0.4 | +14.9 | 14935 | 0.4 | FOXA1 FOS GATA3 DPF2 ZNF579 | CTDP1 LOC284241 ENSG00000274828 HSALNG0122774 NFATC1 | |
| GH18J079647 | Enhancer | 0.4 | Ensembl | 0.3 | +31.8 | 31823 | 1 | POLR2A SMARCA4 EZH2 | CTDP1 NFATC1 HSALNG0122774 ENSG00000274828 LOC284241 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC284241 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC284241 Gene
Genomic Locations for LOC284241 Gene
- chr18:79,638,928-79,679,745
- (GRCh38/hg38)
- Size:
- 40,818 bases
- Orientation:
- Minus strand
- chr18:77,398,928-77,439,745
- (GRCh37/hg19)
- Size:
- 40,818 bases
- Orientation:
- Minus strand
Genomic View for LOC284241 Gene
Genes around LOC284241 on UCSC Golden Path with GeneCards custom track
LOC284241 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18q23 by Entrez Gene
- 18q23 by Ensembl
LOC284241 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC284241 Gene
Proteins for LOC284241 Gene
Protein Expression for LOC284241 Gene
Post-translational modifications for LOC284241 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC284241
- Origene Custom Protein Services for LOC284241
No data available for DME Specific Peptides for LOC284241 Gene
Domains & Families for LOC284241 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC284241 Gene
Function for LOC284241 Gene
Phenotypes From GWAS Catalog for LOC284241 Gene
Phenotypes for LOC284241 Gene
- GenomeRNAi human phenotypes for LOC284241:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LOC284241
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC284241
miRNA Products
Inhibitory RNA Products
- Origene shrna products in human, mouse, rat for LOC284241
- Browse OriGene Inhibitory RNA Products For LOC284241
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC284241
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC284241
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284241 Gene
Localization for LOC284241 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC284241 Gene
Transcripts for LOC284241 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC284241 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000026F70A_9606 | lncRNA | 1111 | 4 |
RefSeq: NR_136643, Ensembl: ENST00000317008 (view in UCSC) , ENST00000633915 (view in UCSC) , LNCipedia: lnc-PQLC1-104:5, NONCODE: NONHSAT060050.2, |
| URS00008C2292_9606 | lncRNA | 658 | 3 |
LncBook: HSALNT0253820, LNCipedia: lnc-PQLC1-104:12, NONCODE: NONHSAT060052.2, |
| URS0000D5AF14_9606 | lncRNA | 6510 | 2 |
LncBook: HSALNT0253817, LNCipedia: lnc-PQLC1-104:14, |
| URS0000D5B52E_9606 | lncRNA | 6332 | 2 |
LncBook: HSALNT0253816, LNCipedia: lnc-PQLC1-104:13, |
| URS0000D573E4_9606 | lncRNA | 2664 | 2 |
LncBook: HSALNT0253818, LNCipedia: lnc-PQLC1-104:17, |
LOC284241 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC284241 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LOC284241
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC284241
miRNA Products
Inhibitory RNA Products
- Origene shrna products in human, mouse, rat for LOC284241
- Browse OriGene Inhibitory RNA Products For LOC284241
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC284241
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC284241
Relevant External Links for LOC284241 Gene
- GeneLoc Exon Structure for
- LOC284241
Expression for LOC284241 Gene
This gene is overexpressed in Heart (69.0).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC284241
Primer Products
-
OriGene qPCR primer pairs for LOC284241
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284241 Gene
Orthologs for LOC284241 Gene
No data available for Orthologs for LOC284241 Gene
Paralogs for LOC284241 Gene
No data available for Paralogs for LOC284241 Gene
Variants for LOC284241 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC284241 Gene
Disorders for LOC284241 Gene
Additional Disease Information for LOC284241
No disorders were found for LOC284241 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC284241 Gene
Publications for LOC284241 Gene
No publications were found for LOC284241 Gene.
No data available for Mastermind for LOC284241 Gene
Products for LOC284241 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC284241
- Origene Custom Protein Services for LOC284241
- Origene shrna products in human, mouse, rat for LOC284241
- Browse OriGene Inhibitory RNA Products For LOC284241
- OriGene qPCR primer pairs for LOC284241
- Browse CRISPR knockouts for LOC284241
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC284241
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC284241
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC284241
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC284241
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC284241
Sources for LOC284241 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB