Aliases for LOC284241 Gene

Subcategory (RNA class) for LOC284241 Gene

ncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC284241 Gene

  • Uncharacterized LOC284241 3
  • Novel Transcript 5
  • NONHSAG024248.2 91
  • NONHSAG024247.2 91
  • HSALNG0122776 164
  • Lnc-PQLC1-104 165
  • AC068473.1 5

External Ids for LOC284241 Gene

Additional External Ids for LOC284241 Gene

Previous GeneCards Identifiers for LOC284241 Gene

  • GC18M077453

Summaries for LOC284241 Gene

GeneCards Summary for LOC284241 Gene

LOC284241 (Uncharacterized LOC284241) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC284241 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC284241 Gene

Genomics for LOC284241 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC284241 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J079677 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.3 -296 5.1 SP1 CREB1 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 SIX5 IKZF1 KDM1A CTDP1 ENSG00000274828 LOC284241 LOC105376875 lnc-NFATC1-2 ATP9B
GH18J079644 Enhancer 1 ENCODE CraniofacialAtlas 0.3 +35.5 35484 0.3 BRCA1 CTCF ZNF143 ZIC2 REST RAD21 TCF12 TRIM22 YY1 ZNF561 NFATC1 HSALNG0122774 ENSG00000274828 LOC284241 CTDP1
GH18J079657 Enhancer 0.6 Ensembl ENCODE 0.4 +22.1 22144 1.2 CTCF MNT YY1 SIN3A CTDP1 HSBP1L1 ENSG00000274828 LOC284241 HSALNG0122774 NFATC1
GH18J079664 Enhancer 0.5 ENCODE 0.4 +14.9 14935 0.4 FOXA1 FOS GATA3 DPF2 ZNF579 CTDP1 LOC284241 ENSG00000274828 HSALNG0122774 NFATC1
GH18J079647 Enhancer 0.4 Ensembl 0.3 +31.8 31823 1 POLR2A SMARCA4 EZH2 CTDP1 NFATC1 HSALNG0122774 ENSG00000274828 LOC284241
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC284241 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC284241 Gene

Genomic Locations for LOC284241 Gene
chr18:79,638,928-79,679,745
(GRCh38/hg38)
Size:
40,818 bases
Orientation:
Minus strand
chr18:77,398,928-77,439,745
(GRCh37/hg19)
Size:
40,818 bases
Orientation:
Minus strand

Genomic View for LOC284241 Gene

Genes around LOC284241 on UCSC Golden Path with GeneCards custom track
LOC284241 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC284241 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284241 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284241 Gene

Proteins for LOC284241 Gene

Post-translational modifications for LOC284241 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284241 Gene

Domains & Families for LOC284241 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC284241 Gene

Function for LOC284241 Gene

Phenotypes From GWAS Catalog for LOC284241 Gene

Phenotypes for LOC284241 Gene

GenomeRNAi human phenotypes for LOC284241:
genes like me logo Genes that share phenotypes with LOC284241: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284241 Gene

Localization for LOC284241 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC284241 Gene

Pathways & Interactions for LOC284241 Gene

PathCards logo

SuperPathways for LOC284241 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC284241 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC284241 Gene

Drugs & Compounds for LOC284241 Gene

No Compound Related Data Available

Transcripts for LOC284241 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC284241 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000026F70A_9606 lncRNA 1111 4

RefSeq: NR_136643,

Ensembl: ENST00000317008 (view in UCSC) , ENST00000633915 (view in UCSC) ,

LNCipedia: lnc-PQLC1-104:5,

NONCODE: NONHSAT060050.2,

URS00008C2292_9606 lncRNA 658 3

LncBook: HSALNT0253820,

LNCipedia: lnc-PQLC1-104:12,

NONCODE: NONHSAT060052.2,

URS0000D5AF14_9606 lncRNA 6510 2

LncBook: HSALNT0253817,

LNCipedia: lnc-PQLC1-104:14,

URS0000D5B52E_9606 lncRNA 6332 2

LncBook: HSALNT0253816,

LNCipedia: lnc-PQLC1-104:13,

URS0000D573E4_9606 lncRNA 2664 2

LncBook: HSALNT0253818,

LNCipedia: lnc-PQLC1-104:17,

LOC284241 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC284241 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284241 Gene

No ASD Table

Relevant External Links for LOC284241 Gene

GeneLoc Exon Structure for
LOC284241

Expression for LOC284241 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC284241 Gene

Protein differential expression in normal tissues from HIPED for LOC284241 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC284241 Gene



Protein tissue co-expression partners for LOC284241 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC284241

genes like me logo Genes that share expression patterns with LOC284241: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284241 Gene

Orthologs for LOC284241 Gene

Evolution for LOC284241 Gene

ENSEMBL:
Gene Tree for LOC284241 (if available)
TreeFam:
Gene Tree for LOC284241 (if available)

No data available for Orthologs for LOC284241 Gene

Paralogs for LOC284241 Gene

No data available for Paralogs for LOC284241 Gene

Variants for LOC284241 Gene

Additional dbSNP identifiers (rs#s) for LOC284241 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC284241 Gene

Disorders for LOC284241 Gene

Additional Disease Information for LOC284241

No disorders were found for LOC284241 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC284241 Gene

Publications for LOC284241 Gene

No publications were found for LOC284241 Gene.

No data available for Mastermind for LOC284241 Gene

Products for LOC284241 Gene

Sources for LOC284241 Gene