Aliases for LOC284240 Gene

Subcategory (RNA class) for LOC284240 Gene

lncRNA

Aliases for LOC284240 Gene

  • Uncharacterized LOC284240 3

External Ids for LOC284240 Gene

Previous GeneCards Identifiers for LOC284240 Gene

  • GC18P077392
  • GC18P077073
  • GC18U900009
  • GC18P075437
  • GC18P075439
  • GC18P077337

Summaries for LOC284240 Gene

GeneCards Summary for LOC284240 Gene

LOC284240 (Uncharacterized LOC284240) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC284240 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC284240 Gene

Genomics for LOC284240 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC284240 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J079575 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.7 -2.6 -2625 2.8 HNRNPL ZIC2 EGR1 ESR1 GABPA ZFHX2 CTCF BHLHE40 ELF1 NRF1 ENSG00000267287 LOC284240 CTDP1 NFATC1
GH18J079587 Enhancer 1 ENCODE CraniofacialAtlas 0.4 +9.9 9872 3.5 GATAD2A TFE3 RXRB IRF2 MNT SOX13 CEBPB ZBTB26 NFE2 RNF2 NFATC1 lnc-PQLC1-15 LOC284240 ENSG00000267287 piR-51878-019 CTDP1
GH18J079584 Enhancer 0.4 Ensembl 0.4 +5.0 5019 0.2 ZSCAN29 VEZF1 CTCF lnc-PQLC1-15 LOC284240 ENSG00000267287 CTDP1 NFATC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC284240 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC284240 Gene

Genomic Locations for LOC284240 Gene
chr18:79,579,282-79,589,018
(GRCh38/hg38)
Size:
9,737 bases
Orientation:
Plus strand
chr18:77,336,460-77,349,010
(GRCh37/hg19)
Size:
12,551 bases
Orientation:
Plus strand

Genomic View for LOC284240 Gene

Genes around LOC284240 on UCSC Golden Path with GeneCards custom track
LOC284240 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC284240 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284240 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284240 Gene

Proteins for LOC284240 Gene

Post-translational modifications for LOC284240 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284240 Gene

Domains & Families for LOC284240 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC284240 Gene

Function for LOC284240 Gene

Phenotypes From GWAS Catalog for LOC284240 Gene

Phenotypes for LOC284240 Gene

genes like me logo Genes that share phenotypes with LOC284240: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284240 Gene

Localization for LOC284240 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC284240 Gene

Pathways & Interactions for LOC284240 Gene

PathCards logo

SuperPathways for LOC284240 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC284240 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC284240 Gene

Drugs & Compounds for LOC284240 Gene

No Compound Related Data Available

Transcripts for LOC284240 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC284240 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC43C3_9606 lncRNA 2956 1

RefSeq: NR_148949,

LOC284240 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC284240 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284240 Gene

No ASD Table

Relevant External Links for LOC284240 Gene

GeneLoc Exon Structure for
LOC284240

Expression for LOC284240 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC284240 Gene

mRNA differential expression in normal tissues according to GTEx for LOC284240 Gene

This gene is overexpressed in Nerve - Tibial (x6.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC284240

genes like me logo Genes that share expression patterns with LOC284240: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284240 Gene

Orthologs for LOC284240 Gene

No data available for Orthologs and Evolution for LOC284240 Gene

Paralogs for LOC284240 Gene

No data available for Paralogs for LOC284240 Gene

Variants for LOC284240 Gene

Additional dbSNP identifiers (rs#s) for LOC284240 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC284240 Gene

Disorders for LOC284240 Gene

No disorders were found for LOC284240 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC284240 Gene

Publications for LOC284240 Gene

No publications were found for LOC284240 Gene.

No data available for Mastermind for LOC284240 Gene

Products for LOC284240 Gene

Sources for LOC284240 Gene