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Aliases for LOC284009 Gene

Subcategory (RNA class) for LOC284009 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC284009 Gene

  • Uncharacterized LOC284009 3

External Ids for LOC284009 Gene

Previous GeneCards Identifiers for LOC284009 Gene

  • GC17M002649
  • GC17M002259
  • GC17U900139
  • GC17M002515
  • GC17M002255
  • GC17M002308
  • GC17M002312

Summaries for LOC284009 Gene

GeneCards Summary for LOC284009 Gene

LOC284009 (Uncharacterized LOC284009) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC284009 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC284009 Gene

Genomics for LOC284009 Gene

GeneHancer (GH) Regulatory Elements for LOC284009 Gene

Promoters and enhancers for LOC284009 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I002415 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 -0.9 -868 1 CTCF ARID4B SIN3A EBF1 RAD21 TEAD3 VEZF1 ZNF143 SMC3 ZNF444 LOC284009 METTL16 ENSG00000279872
GH17I002389 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.4 16424 18.6 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 MNT GC17M002400 GC17M002401 GC17M002387 METTL16 PRPF8 TSR1 HNRNPA1P16 SMYD4 ENSG00000263345
GH17I002412 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.8 +2.7 2748 1 CTCF MAZ POLR2A RCOR1 ZIC2 CHD2 SRR LOC284009 MNT METTL16
GH17I002417 Enhancer 0.5 ENCODE dbSUPER 0.8 -3.5 -3473 3 ATF4 METTL16 SRR LOC284009 ENSG00000279872
GH17I002421 Enhancer 0.7 ENCODE dbSUPER 0.4 -6.2 -6158 1 CTCF ZNF654 GLIS1 RAD21 METTL16 ENSG00000279872 LOC284009
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC284009 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC284009 gene promoter:

Genomic Locations for LOC284009 Gene

Genomic Locations for LOC284009 Gene
chr17:2,406,981-2,415,436
(GRCh38/hg38)
Size:
8,456 bases
Orientation:
Minus strand
chr17:2,310,275-2,318,731
(GRCh37/hg19)

Genomic View for LOC284009 Gene

Genes around LOC284009 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC284009 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284009 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284009 Gene

Proteins for LOC284009 Gene

  • Protein details for LOC284009 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q4G0H6
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    Q4G0H6

    Protein attributes for LOC284009 Gene

    Size:
    157 amino acids
    Molecular mass:
    16957 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC284009 Gene

Post-translational modifications for LOC284009 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284009 Gene

Domains & Families for LOC284009 Gene

Protein Domains for LOC284009 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC284009: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC284009 Gene

Function for LOC284009 Gene

Phenotypes for LOC284009 Gene

genes like me logo Genes that share phenotypes with LOC284009: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284009 Gene

Localization for LOC284009 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC284009 Gene

Pathways & Interactions for LOC284009 Gene

SuperPathways for LOC284009 Gene

No Data Available

Interacting Proteins for LOC284009 Gene

Gene Ontology (GO) - Biological Process for LOC284009 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC284009 Gene

Drugs & Compounds for LOC284009 Gene

No Compound Related Data Available

Transcripts for LOC284009 Gene

Unigene Clusters for LOC284009 Gene

Uncharacterized LOC284009:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284009 Gene

No ASD Table

Relevant External Links for LOC284009 Gene

GeneLoc Exon Structure for
LOC284009

Expression for LOC284009 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC284009 Gene

mRNA expression in normal human tissues for LOC284009 Gene

Protein differential expression in normal tissues from HIPED for LOC284009 Gene

This gene is overexpressed in Saliva (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC284009 Gene



Protein tissue co-expression partners for LOC284009 Gene

SOURCE GeneReport for Unigene cluster for LOC284009 Gene:

Hs.632244
genes like me logo Genes that share expression patterns with LOC284009: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284009 Gene

Orthologs for LOC284009 Gene

No data available for Orthologs and Evolution for LOC284009 Gene

Paralogs for LOC284009 Gene

No data available for Paralogs for LOC284009 Gene

Variants for LOC284009 Gene

Sequence variations from dbSNP and Humsavar for LOC284009 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000038912 -- 2,413,384(-) C/A/T intron_variant
rs1000078912 -- 2,410,176(-) T/C intron_variant
rs1000099887 -- 2,407,183(-) C/A non_coding_transcript_variant
rs1000182092 -- 2,415,007(-) A/G/T intron_variant
rs1000323569 -- 2,412,172(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC284009 Gene

Variant ID Type Subtype PubMed ID
dgv3083n100 CNV gain 25217958
dgv879e212 CNV gain 25503493
dgv880e212 CNV gain 25503493
esv275578 CNV loss 21479260
esv3553998 CNV deletion 23714750
esv3582484 CNV loss 25503493
esv3582485 CNV loss 25503493
esv3639708 CNV loss 21293372
esv3892947 CNV gain 25118596
nsv1063109 CNV gain 25217958
nsv112269 CNV deletion 16902084
nsv574224 CNV gain 21841781
nsv833338 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC284009 Gene

Disorders for LOC284009 Gene

Additional Disease Information for LOC284009

No disorders were found for LOC284009 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC284009 Gene

Publications for LOC284009 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC284009 Gene

Sources for LOC284009 Gene

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