Aliases for LOC283922 Gene

Aliases for LOC283922 Gene

  • Pyruvate Dehydrogenase Phosphatase Regulatory Subunit Pseudogene 3

External Ids for LOC283922 Gene

Previous GeneCards Identifiers for LOC283922 Gene

  • GC16M075323
  • GC16M074105
  • GC16M074142
  • GC16M074139
  • GC16M072922
  • GC16U900617
  • GC16M074367

Summaries for LOC283922 Gene

GeneCards Summary for LOC283922 Gene

LOC283922 (Pyruvate Dehydrogenase Phosphatase Regulatory Subunit Pseudogene) is a Pseudogene.

Additional gene information for LOC283922 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC283922 Gene

Genomics for LOC283922 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC283922 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J074367 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.1 -146 4 CREB1 ZBTB33 ZNF629 PRDM10 TFE3 ZNF512 IKZF1 ZNF692 BACH1 LARP7 ENSG00000261079 ENSG00000214331 LOC283922 RF00017-2151 lnc-CLEC18B-2 PSMD7 CLEC18B RFWD3 NPIPB15 piR-39678-011
GH16J074372 Enhancer 0.4 Ensembl 0.7 -4.3 -4345 0.4 ZNF7 CEBPA HLF LOC283922 NPIPB15 piR-39678-011 PSMD7 RF00017-2150
GH16J074361 Enhancer 0.4 Ensembl dbSUPER 0.4 +6.6 6554 0.2 ZNF623 MN297392 PSMD7 RNU6-237P RFWD3 MN297393 ENSG00000214331 LOC283922 lnc-CLEC18B-2 NPIPB15 RF00017-2150
GH16J074362 Enhancer 0.3 Ensembl dbSUPER 0.4 +6.1 6054 0.4 MN297393 PSMD7 RNU6-237P ENSG00000214331 MN297392 LOC283922 lnc-CLEC18B-2 NPIPB15 RF00017-2150
GH16J074347 Enhancer 0.2 Ensembl 0.4 +20.7 20654 0.4 RNU6-237P ENSG00000214331 piR-48676-002 piR-38418-002 MN297392 LOC283922 NPIPB15 PSMD7 RF00017-2150
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC283922 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC283922 gene promoter:
  • c-Myc
  • FOXO4
  • Lmo2
  • Max
  • Max1
  • USF-1
  • USF-1:USF-2
  • USF1
  • USF2

Genomic Locations for LOC283922 Gene

Genomic Locations for LOC283922 Gene
chr16:74,332,406-74,368,255
(GRCh38/hg38)
Size:
35,850 bases
Orientation:
Minus strand
chr16:74,366,304-74,402,153
(GRCh37/hg19)
Size:
35,850 bases
Orientation:
Minus strand

Genomic View for LOC283922 Gene

Genes around LOC283922 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC283922 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC283922 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC283922 Gene

Proteins for LOC283922 Gene

Post-translational modifications for LOC283922 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC283922 Gene

Domains & Families for LOC283922 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC283922 Gene

Function for LOC283922 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC283922 Gene

Localization for LOC283922 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC283922 Gene

Pathways & Interactions for LOC283922 Gene

PathCards logo

SuperPathways for LOC283922 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC283922 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC283922 Gene

Drugs & Compounds for LOC283922 Gene

No Compound Related Data Available

Transcripts for LOC283922 Gene

mRNA/cDNA for LOC283922 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC283922 Gene

No ASD Table

Relevant External Links for LOC283922 Gene

GeneLoc Exon Structure for
LOC283922

Expression for LOC283922 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC283922

SOURCE GeneReport for Unigene cluster for LOC283922 Gene:

Hs.558726
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC283922 Gene

Orthologs for LOC283922 Gene

No data available for Orthologs and Evolution for LOC283922 Gene

Paralogs for LOC283922 Gene

No data available for Paralogs for LOC283922 Gene

Variants for LOC283922 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC283922 Gene

Variant ID Type Subtype PubMed ID
dgv488n67 CNV loss 20364138
dgv489n67 CNV loss 20364138
dgv534e214 CNV gain 21293372
dgv852e212 CNV loss 25503493
dgv853e212 CNV gain 25503493
dgv854e212 CNV loss 25503493
dgv855e212 CNV gain 25503493
esv22159 CNV gain+loss 19812545
esv2758656 CNV gain+loss 17122850
esv2760420 CNV gain+loss 21179565
esv2762054 CNV gain 21179565
esv32572 CNV gain 17666407
esv3358061 CNV duplication 20981092
esv3395224 CNV duplication 20981092
esv3426770 CNV duplication 20981092
esv3553661 CNV deletion 23714750
esv3571520 CNV gain 25503493
esv3582311 CNV loss 25503493
esv3582313 CNV loss 25503493
esv3639060 CNV loss 21293372
esv3639061 CNV loss 21293372
esv3639062 CNV gain 21293372
esv996603 CNV loss 20482838
nsv1065964 CNV gain 25217958
nsv1076436 CNV duplication 25765185
nsv1113820 CNV deletion 24896259
nsv1115509 CNV duplication 24896259
nsv1118584 CNV duplication 24896259
nsv1124743 CNV duplication 24896259
nsv1151078 CNV duplication 26484159
nsv1160432 CNV duplication 26073780
nsv442726 CNV gain 18776908
nsv509632 CNV insertion 20534489
nsv572972 CNV gain 21841781
nsv572973 CNV loss 21841781
nsv7285 OTHER inversion 18451855
nsv819754 CNV loss 19587683
nsv821370 CNV duplication 20802225
nsv827736 CNV gain 20364138
nsv827737 CNV gain+loss 20364138
nsv827738 CNV gain 20364138
nsv833276 CNV loss 17160897
nsv833277 CNV loss 17160897
nsv9457 CNV gain+loss 18304495
nsv952053 CNV duplication 24416366
nsv974833 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC283922 Gene

Disorders for LOC283922 Gene

No disorders were found for LOC283922 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC283922 Gene

Publications for LOC283922 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC283922 Gene

Products for LOC283922 Gene

Sources for LOC283922 Gene