LOC283710 Gene (Protein Coding)

Uncharacterized LOC283710

GC15M031221
GIFtS:
14

Aliases for LOC283710 Gene

Aliases for LOC283710 Gene

  • Uncharacterized LOC283710 3 5
  • Uncharacterized Protein LOC283710 3
  • NONHSAG016431 94
  • HSALNG0104812 169
  • Lnc-TRPM1-1 170
  • AC012236.1 5

External Ids for LOC283710 Gene

Previous GeneCards Identifiers for LOC283710 Gene

  • GC15M024271
  • GC15M029095
  • GC15M029231
  • GC15M029302
  • GC15M031514
  • GC15M008691

Summaries for LOC283710 Gene

GeneCards Summary for LOC283710 Gene

LOC283710 (Uncharacterized LOC283710) is a Protein Coding gene.

Additional gene information for LOC283710 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC283710 Gene

Genomics for LOC283710 Gene

GeneHancer (GH) Regulatory Elements for LOC283710 Gene

Promoters and enhancers for LOC283710 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH15J031227 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 757.9 +1.0 971 4.6 ZNF24 SP1 POLR2A MYC RELA MAX MAFK MLLT1 ZNF687 CREM LOC283710 ENSG00000270055 piR-39050
GH15J031234 Enhancer 1.1 ENCODE dbSUPER 6.7 -5.4 -5425 2.6 SP1 RBPJ SMARCE1 CREB1 NKRF ELF3 TFE3 MLLT1 SP7 ZNF687 CHRNA7 LOC283710 HSALNG0104813
GH15J031223 Enhancer 0.7 ENCODE dbSUPER 7.3 +7.1 7070 1.3 MAFK MCM2 ZNF316 MAFG MAFF EMSY piR-39050 ENSG00000270055 KLF13 LOC283710 MTMR10 LINC02352
GH15J031217 Promoter/Enhancer 0.7 Ensembl ENCODE dbSUPER 4.9 +12.5 12536 1 ENSG00000270055 KLF13 CHRNA7 LOC283710 LINC02352 piR-39050
GH15J031225 Enhancer 0.3 dbSUPER 7.3 +5.2 5218 0.7 MLLT1 ZIC2 piR-39050 KLF13 CHRNA7 LOC283710
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC283710 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC283710 gene promoter:
  • ATF-2
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • POU6F1 (c2)
  • SEF-1 (1)
  • STAT3

Genomic Locations for LOC283710 Gene

Genomic Locations for LOC283710 Gene
chr15:31,221,813-31,230,847
(GRCh38/hg38)
Size:
9,035 bases
Orientation:
Minus strand
chr15:31,514,202-31,523,050
(GRCh37/hg19)
Size:
8,849 bases
Orientation:
Minus strand

Genomic View for LOC283710 Gene

Genes around LOC283710 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC283710 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC283710 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC283710 Gene

Proteins for LOC283710 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC283710 Gene

No Post-translational modifications

Other Protein References for LOC283710 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC283710 Gene

Domains & Families for LOC283710 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC283710 Gene

Function for LOC283710 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC283710 Gene

genes like me logo Genes that share phenotypes with LOC283710: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC283710

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC283710 Gene

Localization for LOC283710 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC283710 Gene

Pathways & Interactions for LOC283710 Gene

PathCards logo

SuperPathways for LOC283710 Gene

No Data Available

Interacting Proteins for LOC283710 Gene

Gene Ontology (GO) - Biological Process for LOC283710 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC283710 Gene

Drugs & Compounds for LOC283710 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC283710 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC283710 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(21) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(27) RNACentral transcripts :
(11) LncBook transcripts :
(27) LNCipedia transcripts :
(12) NONCODE transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC283710

Alternative Splicing Database (ASD) splice patterns (SP) for LOC283710 Gene

No ASD Table

Relevant External Links for LOC283710 Gene

GeneLoc Exon Structure for
LOC283710

Expression for LOC283710 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC283710 Gene

mRNA expression in normal human tissues for LOC283710 Gene
mRNA expression by GTEx for LOC283710 Gene

SOURCE GeneReport for Unigene cluster for LOC283710 Gene:

Hs.591097
genes like me logo Genes that share expression patterns with LOC283710: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC283710 Gene

Orthologs for LOC283710 Gene

Evolution for LOC283710 Gene

ENSEMBL:
Gene Tree for LOC283710 (if available)
TreeFam:
Gene Tree for LOC283710 (if available)

No data available for Orthologs for LOC283710 Gene

Paralogs for LOC283710 Gene

No data available for Paralogs for LOC283710 Gene

Variants for LOC283710 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC283710 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000237132 -- 31,223,604(-) G/A coding_sequence_variant, synonymous_variant
rs1000597972 -- 31,225,340(-) G/A intron_variant
rs1000598708 -- 31,228,351(-) G/A intron_variant
rs1000650305 -- 31,225,272(-) C/T intron_variant
rs1001009580 -- 31,226,117(-) T/C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC283710 Gene

Variant ID Type Subtype PubMed ID
esv34100 CNV loss 18971310
esv3636045 CNV gain 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC283710 Gene

Disorders for LOC283710 Gene

No disorders were found for LOC283710 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC283710 Gene

Publications for LOC283710 Gene

  1. Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease. (PMID: 25017104) Kottyan LC … Rothenberg ME (Nature genetics 2014) 3 56

No data available for External Links for LOC283710 Gene

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Sources for LOC283710 Gene