Aliases for LOC283387 Gene

Subcategory (RNA class) for LOC283387 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC283387 Gene

  • Uncharacterized LOC283387 3
  • Novel Transcript 5
  • NONHSAG011459.2 91
  • HSALNG0091673 164
  • Lnc-CTDSP2-1 165
  • AC083805.1 5

External Ids for LOC283387 Gene

Previous GeneCards Identifiers for LOC283387 Gene

  • GC12M058406
  • GC12M057981
  • GC12U900213
  • GC12M057869

Summaries for LOC283387 Gene

GeneCards Summary for LOC283387 Gene

LOC283387 (Uncharacterized LOC283387) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC283387 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC283387 Gene

Genomics for LOC283387 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC283387 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC283387 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC283387 Gene

Genomic Locations for LOC283387 Gene
chr12:57,868,120-57,896,484
(GRCh38/hg38)
Size:
28,365 bases
Orientation:
Minus strand
chr12:58,263,618-58,290,265
(GRCh37/hg19)
Size:
26,648 bases
Orientation:
Minus strand

Genomic View for LOC283387 Gene

Genes around LOC283387 on UCSC Golden Path with GeneCards custom track
LOC283387 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC283387 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC283387 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC283387 Gene

Proteins for LOC283387 Gene

Post-translational modifications for LOC283387 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC283387 Gene

Domains & Families for LOC283387 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC283387 Gene

Function for LOC283387 Gene

Phenotypes From GWAS Catalog for LOC283387 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC283387 Gene

Localization for LOC283387 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC283387 Gene

Pathways & Interactions for LOC283387 Gene

PathCards logo

SuperPathways for LOC283387 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC283387 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC283387 Gene

Drugs & Compounds for LOC283387 Gene

No Compound Related Data Available

Transcripts for LOC283387 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC283387 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000049D8F2_9606 lncRNA 549 4

Ensembl: ENST00000548955 (view in UCSC) ,

LncBook: HSALNT0190064,

LNCipedia: lnc-CTDSP2-1:4,

NONCODE: NONHSAT028990.2,

URS00004B48CD_9606 lncRNA 3507 2

Ensembl: ENST00000499481 (view in UCSC) ,

LNCipedia: lnc-CTDSP2-1:3,

URS0000BC4536_9606 lncRNA 3507 1

RefSeq: NR_148947,

URS0000EF35F8_9606 lncRNA 1812 1

Ensembl: ENST00000664926 (view in UCSC) ,

URS0000EF4A36_9606 lncRNA 1720 1

Ensembl: ENST00000667552 (view in UCSC) ,

LOC283387 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC283387 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC283387 Gene

No ASD Table

Relevant External Links for LOC283387 Gene

GeneLoc Exon Structure for
LOC283387

Expression for LOC283387 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC283387 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC283387

SOURCE GeneReport for Unigene cluster for LOC283387 Gene:

Hs.727244
genes like me logo Genes that share expression patterns with LOC283387: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC283387 Gene

Orthologs for LOC283387 Gene

Evolution for LOC283387 Gene

ENSEMBL:
Gene Tree for LOC283387 (if available)
TreeFam:
Gene Tree for LOC283387 (if available)

No data available for Orthologs for LOC283387 Gene

Paralogs for LOC283387 Gene

No data available for Paralogs for LOC283387 Gene

Variants for LOC283387 Gene

Additional dbSNP identifiers (rs#s) for LOC283387 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC283387 Gene

Disorders for LOC283387 Gene

Additional Disease Information for LOC283387

No disorders were found for LOC283387 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC283387 Gene

Publications for LOC283387 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC283387 Gene

Products for LOC283387 Gene

Sources for LOC283387 Gene