Aliases for LOC283335 Gene

Subcategory (RNA class) for LOC283335 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC283335 Gene

  • Uncharacterized LOC283335 3
  • NONHSAG011211.2 91
  • HSALNG0091230 164
  • Lnc-SPRYD3-1 165

External Ids for LOC283335 Gene

Previous GeneCards Identifiers for LOC283335 Gene

  • GC12M053350
  • GC12M053153
  • GC12U900120
  • GC12M053014

Summaries for LOC283335 Gene

GeneCards Summary for LOC283335 Gene

LOC283335 (Uncharacterized LOC283335) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC283335 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC283335 Gene

Genomics for LOC283335 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC283335 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053055 Enhancer 0.2 dbSUPER 600.7 -1.5 -1488 0.1 ENSG00000257337 LOC283335 MIR6757 TNS2 SPRYD3
GH12J053043 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +4.8 4825 12 ARHGAP35 HNRNPL CREB1 GATAD2A CTCF ZBTB33 ATF7 TEAD4 PRDM10 ZNF629 TNS2 ENSG00000257337 EIF4B AAAS ZNF740 TARBP2 MAP3K12 NPFF ENSG00000257605 CSAD
GH12J053038 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +15.1 15089 2.1 CTCF PRDM1 SP1 POLR2A ZNF444 RBM22 NR2F2 RAD21 ZNF384 ZFP69B NONHSAG011212.2 EIF4B ENSG00000257337 IGFBP6 SOAT2 MYG1 TNS2 LOC283335
GH12J053042 Enhancer 0.7 ENCODE dbSUPER 0.4 +11.6 11604 0.6 POLR2A SMAD5 BCLAF1 RBM22 MYNN SUPT5H ZBTB33 POLR2B BCL3 PML EIF4B TNS2 NONHSAG011212.2 ENSG00000257337 LOC283335
GH12J053033 Enhancer 0.3 Ensembl dbSUPER 0.4 +20.4 20437 0.4 EIF4B NONHSAG011212.2 TNS2 ENSG00000257337 ENSG00000257475 LOC283335
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC283335 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC283335 Gene

Genomic Locations for LOC283335 Gene
chr12:53,014,629-53,054,438
(GRCh38/hg38)
Size:
39,810 bases
Orientation:
Minus strand

Genomic View for LOC283335 Gene

Genes around LOC283335 on UCSC Golden Path with GeneCards custom track
LOC283335 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC283335 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC283335 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC283335 Gene

Proteins for LOC283335 Gene

Post-translational modifications for LOC283335 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC283335 Gene

Domains & Families for LOC283335 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC283335 Gene

Function for LOC283335 Gene

Phenotypes From GWAS Catalog for LOC283335 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC283335 Gene

Localization for LOC283335 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC283335 Gene

Pathways & Interactions for LOC283335 Gene

PathCards logo

SuperPathways for LOC283335 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC283335 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC283335 Gene

Drugs & Compounds for LOC283335 Gene

No Compound Related Data Available

Transcripts for LOC283335 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC283335 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000611D31_9606 lncRNA 2863 4

RefSeq: NR_033854,

Ensembl: ENST00000546793 (view in UCSC) ,

LNCipedia: lnc-SPRYD3-1:1,

NONCODE: NONHSAT028402.2,

URS00008C3B27_9606 lncRNA 1320 3

LncBook: HSALNT0189269,

LNCipedia: lnc-SPRYD3-1:11,

NONCODE: NONHSAT028398.2,

URS00009AE615_9606 lncRNA 1166 3

LncBook: HSALNT0189270,

LNCipedia: lnc-SPRYD3-1:13,

NONCODE: NONHSAT028396.2,

URS00009B010C_9606 lncRNA 934 3

LncBook: HSALNT0189267,

LNCipedia: lnc-SPRYD3-1:14,

NONCODE: NONHSAT028395.2,

URS00008C11C1_9606 lncRNA 880 3

LncBook: HSALNT0189268,

LNCipedia: lnc-SPRYD3-1:12,

NONCODE: NONHSAT028397.2,

LOC283335 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC283335 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC283335 Gene

No ASD Table

Relevant External Links for LOC283335 Gene

GeneLoc Exon Structure for
LOC283335

Expression for LOC283335 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC283335 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC283335

SOURCE GeneReport for Unigene cluster for LOC283335 Gene:

Hs.657060
genes like me logo Genes that share expression patterns with LOC283335: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC283335 Gene

Orthologs for LOC283335 Gene

No data available for Orthologs and Evolution for LOC283335 Gene

Paralogs for LOC283335 Gene

No data available for Paralogs for LOC283335 Gene

Variants for LOC283335 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC283335 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
717657 Benign: not provided 53,054,330(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
740560 Benign: not provided 53,051,920(-) A/G SYNONYMOUS_VARIANT,FIVE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for LOC283335 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC283335 Gene

Variant ID Type Subtype PubMed ID
esv28917 CNV loss 19812545
nsv1136150 CNV deletion 24896259
nsv470294 CNV loss 18288195
nsv517066 CNV loss 19592680
nsv558985 CNV loss 21841781
nsv558986 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC283335 Gene

Disorders for LOC283335 Gene

No disorders were found for LOC283335 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC283335 Gene

Publications for LOC283335 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC283335 Gene

Products for LOC283335 Gene

Sources for LOC283335 Gene