LOC260422 Gene (Pseudogene)

Actin Related Protein 2/3 Complex Subunit 1A Pseudogene

GC04M086912
GIFtS:
4
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Aliases for LOC260422 Gene

Aliases for LOC260422 Gene

  • Actin Related Protein 2/3 Complex Subunit 1A Pseudogene 3
  • Actin Related Protein 2/3 Complex, Subunit 1A, 41kDa Pseudogene 3

External Ids for LOC260422 Gene

Previous GeneCards Identifiers for LOC260422 Gene

  • GC04U990155
  • GC04M088227
  • GC04M088292
  • GC04M088191
  • GC04M088053
  • GC04M087834

Summaries for LOC260422 Gene

GeneCards Summary for LOC260422 Gene

LOC260422 (Actin Related Protein 2/3 Complex Subunit 1A Pseudogene) is a Pseudogene.

Additional gene information for LOC260422 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC260422 Gene

Genomics for LOC260422 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC260422 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J086917 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.6 -7584 14.2 CEBPG CREB1 GATAD2A CTCF PRDM10 ZNF629 ZNF512 IKZF1 KDM1A JUND C4orf36 ENSG00000251411 AFF1 HSD17B13 PTPN13 HSD17B11 LOC260422 ENSG00000284968 ENSG00000285458 AFF1-AS1
GH04J086931 Enhancer 0.2 Ensembl 0.4 -16.5 -16484 0.4 ENSG00000251411 AFF1 AFF1-AS1 ENSG00000284968 ENSG00000285458 LOC260422 C4orf36
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC260422 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC260422 Gene

Genomic Locations for LOC260422 Gene
chr4:86,912,928-86,914,917
(GRCh38/hg38)
Size:
1,990 bases
Orientation:
Minus strand
chr4:87,834,081-87,836,070
(GRCh37/hg19)
Size:
1,990 bases
Orientation:
Minus strand

Genomic View for LOC260422 Gene

Genes around LOC260422 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC260422 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC260422 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC260422 Gene

Proteins for LOC260422 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC260422 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC260422 Gene

Domains & Families for LOC260422 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC260422 Gene

Function for LOC260422 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC260422 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC260422 Gene

Localization for LOC260422 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC260422 Gene

Pathways & Interactions for LOC260422 Gene

PathCards logo

SuperPathways for LOC260422 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC260422 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC260422 Gene

Drugs & Compounds for LOC260422 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC260422 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC260422 Gene

No ASD Table

Relevant External Links for LOC260422 Gene

GeneLoc Exon Structure for
LOC260422

No data available for mRNA/cDNA for LOC260422 Gene

Expression for LOC260422 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC260422 Gene

mRNA expression in normal human tissues for LOC260422 Gene
mRNA expression by GTEx for LOC260422 Gene
genes like me logo Genes that share expression patterns with LOC260422: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC260422 Gene

Orthologs for LOC260422 Gene

No data available for Orthologs and Evolution for LOC260422 Gene

Paralogs for LOC260422 Gene

No data available for Paralogs for LOC260422 Gene

Variants for LOC260422 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC260422 Gene

Disorders for LOC260422 Gene

No disorders were found for LOC260422 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC260422 Gene

Publications for LOC260422 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

No data available for Mastermind for LOC260422 Gene

Products for LOC260422 Gene

Sources for LOC260422 Gene